Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00093 ATGAAACAAAACCCCCACCTCTGTCCCATCACCCACGCGCATCTCCACGCGCCGCCACTCATTCTCCTTTGCGGGTGGTGGGTCCCACTCTCCTTACGTCAGTCCGTTTCAGGGTACGGGAATGCGTGCACCCCTCGCATCGCAGAGTTTCAGTGTTTGGCATTGGCGTTTTCCCTCACGCGCGCCCTTGCCCAAAATCCCTTTTCAAATTCAATTTCTCTCATCACAAGTCTTTCCCTTTTTCTCACTTCTCCTCGCCTCATGCTCCCTCCTGCCGTGGAAGAGAAGGATGGAGAATTAAGAGTGGCGGAAAAAGTGTATGAAACTGCCATTAATGACTTATTTGTTTGTTTCCTCTCCAACACTTGCTTATTAAGCTCCATCACTCTTCATCTCTGCGATCTCACCCTTCACACCACAATTCCCGTCCTCCCAAAATGGATTTCGAGGACCATGACCAACCTCAGCTGGGGATGCCCGGACCCACCTATGATCACTCGCCGTTCAACCCCTGCCGAGTCAAAAATGCCCACTCACACCGCCCAAGAAGACCCCCTGCCGCCGGCGGCCACTCCACCACCCACCATCAACCGAAACAGCGCCAAGGGAAAGTACAAAGAGTGCCTCAAGAACCACGCCGTCGGAATCGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGCGCCGAGGGTACCCTGGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAGGACCCCGCCGAGAGCTCCTTCCTAATGCCCTTCCAGCAGCGCCGCCACCAGCCGCCGCCGCAGTTCGCGGCGGCCTTCTACCGGGCCCCGGCGGGGTACCTGCAGGTGGCGGGGCCGCAGCGTGGAGGCCTTGCCACGCTGGCACTCCCGTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGGGGGAGGAACAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACTAAGTTCTCTCTGGAACAGAAAGACAAGATGCTCGCTTTCGCTGAAAAACTGGGTTGGAGGATTCAGAAGCACGACGAGAGTCTCGTGCAGGACTTCTGTTCCCAAACTGGCCTTCAGCGTCACGTCCTCAAGGTTTGGATGCATAACAACAAGCACACCCTTGGAGGAAGTTTGTCGGTACCATCAATGCCTTCCCACCTGCATTTTCCGTTTTACATGTCTTCGCTCTCTTCGCTCTCTTCTGCTAACTGCAAAGTTCTCCCCACTCATCTAGGTGAAAGGAATAACCAATCGAGGACCACCGTACCTGGAGACCGTGAAGACCAGAAGACAAAGACGGAAGGATTGTTTCATGAGTTGTGTGAAGGTGGAACAAGGAAGTGTTTGACAAGAAGTGCAGTCACTGTTCTCTCCTCTGTTTCTTAG 1443 0.5613 MKQNPHLCPITHAHLHAPPLILLCGWWVPLSLRQSVSGYGNACTPRIAEFQCLALAFSLTRALAQNPFSNSISLITSLSLFLTSPRLMLPPAVEEKDGELRVAEKVYETAINDLFVCFLSNTCLLSSITLHLCDLTLHTTIPVLPKWISRTMTNLSWGCPDPPMITRRSTPAESKMPTHTAQEDPLPPAATPPPTINRNSAKGKYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPAESSFLMPFQQRRHQPPPQFAAAFYRAPAGYLQVAGPQRGGLATLALPSTSGAGGGAQSPGEEQEDVSDPSGGGSGSNKKRFRTKFSLEQKDKMLAFAEKLGWRIQKHDESLVQDFCSQTGLQRHVLKVWMHNNKHTLGGSLSVPSMPSHLHFPFYMSSLSSLSSANCKVLPTHLGERNNQSRTTVPGDREDQKTKTEGLFHELCEGGTRKCLTRSAVTVLSSVS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00093 480 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 205 254 IPR006456 -
Phco8g00093 480 NCBIfam homeobox domain, ZF-HD class 334 390 IPR006455 -
Phco8g00093 480 Gene3D - 319 396 - -
Phco8g00093 480 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 185 393 - -
Phco8g00093 480 MobiDBLite consensus disorder prediction 429 450 - -
Phco8g00093 480 MobiDBLite consensus disorder prediction 163 197 - -
Phco8g00093 480 FunFam Zinc-finger homeodomain protein 2 322 395 - -
Phco8g00093 480 SUPERFAMILY Homeodomain-like 325 392 IPR009057 -
Phco8g00093 480 MobiDBLite consensus disorder prediction 298 339 - -
Phco8g00093 480 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 204 254 IPR006456 -
Phco8g00093 480 Pfam ZF-HD protein dimerisation region 204 254 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00093 Phco-Chr8 849042 859521 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco8g00093 ZF-HD_dimer 4.2e-28 No_clan