Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00088 ATGCCTGCCCTCATCGATCTCAACAGCGCCACCGAGGACCATGAAACGCCATCGTCTCGCCCATCCTCCGTCTGCCTCGAACTCTGGCATGCCTGCGCGGGTCCTATGATCTCCTTGCCCAAGAAAGGGACCCTTGTCGTGTACTTCCCTCAAGGACACTTGGAACAACACCTTCACGATTTTCCGCTCCCTGCTTCTGCTAACATCCCCTCCCATCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATTCTGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTGGTGCTGGTTCCCGAAAGTGAGCAAGTGCATCAGAAGTTGCGGGAAGGGGAAATTGATGCTGATGGTGAAGAGGAGGATGCTGAAGCTGTGATGAAGTCCACCACACCCCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCTCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCGAAGGATCTGCATGGCCAAGAATGGAGGTTCCGACATATTTATAGGGGGCAACCACGACGACACTTGCTTACCACAGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTAGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAATTGAAAAGTGGCAGTACCATTTCAACTTTTGCTGGCCAGCAATTGAATCTTAGCAGTCTTCTGGATGTGGTTAATGCTTTATCAGCAAGATGTGCCTTTAGTGTTCACTATAATCCGAGGGTCAGCTCATCTGAGTTCATCATACCCATTAAGAAATTCTTAAGGAGCCTTGATTATTCTTATTCAGTTGGAACAAGATTTAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGAATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACCTGGAAGCCACAAGACATAATAGGGTTTCACCCTGGGAGATTGAGCCATCTGGTTCTGCATCTACTGCAAATAACTTGATATCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAACCAAGCTAGATTTTCAAGTTTCCAATGCAATTGGAGCATCAGACTTTGGCGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTTTGATAGTACTAATGGTCAGGGTCACCAGCTATCTGATTTGAGGAGATGCTATCCTGGCTCAAACTGTTCTAGGATTGCTGCAACCGGAAATAGCATTGGAATTCCGCAAGTGAGTCCCAATGTTTCCTGCAATGGCATGGGCTTCAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTTTCTGTTGATGAGGCTTGTGGAAATGGTCCCTTTGGACCTTTTGATGGTTACCATGCACTGAGATCCAGAAATGGATGGTCCTCCCACTTGAGTAACGGTTCTTCACATTTGCATCCACCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCCGTGTTAATGTTCCAGCAAGCACTCAATCCAGTTTCAAACTCTGATTATAACAGCAAAATTAGTCAGGTGATGGAAGGTAAAGTCCAACAACGATCATACACTTCTGAAGCTAAAGGTGGAAAATTTGTATCAACCCCTTTTGAGCCTCTTCGTGGACTAGCTCAGGAAGGCACAAATTCTTTTGGTGTCTCAAACTTGCATAATCAGTTAGAAAGTTCACGTTCACACGATTCTATTTCAGCACTTCGGGCTACTCAAGAGTTGGTTCCCACTTGTAAAAGTCGATGCAGAGTCTTTGGCTTCTCATTAACTGAGGGTGCTCCCGTTGCAAGTAAAGAAGTAGCCGGCGCCGACCCATCTGCAGTCACATGTTCTGGACCTTCCTTTGCAAGACACGCTGAAGATGATTTCCATCCAGTGCATTCGCTTAGGAGCAAGGCAGTGGGAAGTTATTGCACTAAAGGTGTGCTGCAATATTGA 2127 0.4631 MPALIDLNSATEDHETPSSRPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHSEEGSDEVYCQVVLVPESEQVHQKLREGEIDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSRDAVLFLRGEDGELRLGIRRAAQLKSGSTISTFAGQQLNLSSLLDVVNALSARCAFSVHYNPRVSSSEFIIPIKKFLRSLDYSYSVGTRFRMRFETEDAAERRFTGLIVGITDVDPVRWPESKWRCLMVRWDDLEATRHNRVSPWEIEPSGSASTANNLISAGLKRTKIGLPSTKLDFQVSNAIGASDFGESLRFQKVLQGQEMLGVNTTFDSTNGQGHQLSDLRRCYPGSNCSRIAATGNSIGIPQVSPNVSCNGMGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNGPFGPFDGYHALRSRNGWSSHLSNGSSHLHPPVPSGQVSSPSSVLMFQQALNPVSNSDYNSKISQVMEGKVQQRSYTSEAKGGKFVSTPFEPLRGLAQEGTNSFGVSNLHNQLESSRSHDSISALRATQELVPTCKSRCRVFGFSLTEGAPVASKEVAGADPSAVTCSGPSFARHAEDDFHPVHSLRSKAVGSYCTKGVLQY 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00088 708 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Phco8g00088 708 FunFam Auxin response factor 297 368 - -
Phco8g00088 708 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco8g00088 708 SMART B3_2 134 236 IPR003340 GO:0003677
Phco8g00088 708 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Phco8g00088 708 Gene3D - 132 236 IPR015300 -
Phco8g00088 708 SUPERFAMILY DNA-binding pseudobarrel domain 127 244 IPR015300 -
Phco8g00088 708 CDD B3_DNA 132 234 IPR003340 GO:0003677
Phco8g00088 708 FunFam Auxin response factor 132 236 - -
Phco8g00088 708 Pfam Auxin response factor 261 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco8g00088 708 Gene3D - 297 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00088 Phco-Chr8 799447 803710 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco8g00088 B3 4.6e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00088 8 799447 803710 Phco8g00088 8 799447 803710 ECH