Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00052 ATGGATCGCTCTGCTATGACTGTTGTGCCAGGAATGGATTTGCCGATCATGCATGACAGTGATCGCTATGAACTTGTGCGTGACATTGGTTCTGGCAACTTCGGTGTAGCCAGGCTCATGAGGGACAAGCACACCGAGGAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAGAGGGAAATTATAAATCACAGATCTCTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTTATATTGACACCAACACATTTGGCAATTGTTATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGGTTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGCGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCAGTGCTACATTCTCAACCAAAATCTACAGTGGGAACCCCTGCATATATCGCTCCAGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCATTTGAGGATCCGGAGGAACCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTACTCAATTCCAGACTATGTTCATATATCTCCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAAAGAATAAGTATTCCTGAGATTAGAAACCACGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTGATGGATGGGAATACGAACAATGAGTTTGAGGAGCCTGATCAACCAACACAAAGTATTGAAGAAATCATGCAGATAATTAGAGAGGCTACAATTCCTGCAGCTGGATCTCAGTCTCCCAACCATGATCTTACTGGTAGCTTGGATATTGATGAGGACATGGATACAGATCCTGACCTTGACTTAGATAGCAGTGGAGAAATTGTGTATGCTATGTAA 1077 0.4234 MDRSAMTVVPGMDLPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLPSDLMDGNTNNEFEEPDQPTQSIEEIMQIIREATIPAAGSQSPNHDLTGSLDIDEDMDTDPDLDLDSSGEIVYAM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00052 358 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Phco8g00052 358 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00052 358 PANTHER SERINE/THREONINE KINASE 22 307 - -
Phco8g00052 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Phco8g00052 358 SUPERFAMILY Protein kinase-like (PK-like) 15 291 IPR011009 -
Phco8g00052 358 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00052 358 CDD STKc_SnRK2-3 22 278 - -
Phco8g00052 358 FunFam Serine/threonine-protein kinase SRK2E 12 98 - -
Phco8g00052 358 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Phco8g00052 358 MobiDBLite consensus disorder prediction 318 351 - -
Phco8g00052 358 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Phco8g00052 358 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00052 358 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00052 Phco-Chr8 472891 475482 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Phco8g00052 Pkinase 3.4e-72 CL0016