Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g03084 ATGGATCAGGAGTCACTCTCAGAAACCCCAGATATCTCGCCCCCTTCATCTACAGCACAGTCTCAGTCAGATCCATCCCTTTCAAGTAACGGATCTTTTAGCCGGCTCAACGCTCAAGCACCAGAATTTGTGCCAACTCGAGCCACCCCACGGACCGATTTGCAGCAACCGAGGCTTGTTGTTTCACCTCCTCCTCCAGCTTCTAGTATGGTACACGTTTATTCACTGCCCCATATACCGATTCAAGGCCATGTCGTCCCGGTCCAGAATCATCATCATAATCTTGGCCATCAGCATCATGTTCCAGTTCACTACCGGTCTCATCATCACCCGCATCAGTATTATGTTAGTTCTGATCCTACCGTGCAGCAGTCTCAAGTTGATCCAGATCGTATTTCTTCTTCCAAAAGCAAGCTGTCTGACGAAGCCAGTCAGAAAATTTTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACTGATCATTTGATGAAGTTCATCAACAAAGATCCAGAAGGTTTTGTGCCTATATCTGTTGTTGCATCTTTCAAAAAGATTAAGGCCCTCATAACCAGTAACCCCCTACTTGCGACTGTTTTGAGGAACTCATCAAAGCTCGTGGTTAGTGAAGATGGAAAGAAAATCAAACGCCAGTATCCCCTGACTGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCTGAGGATCATTGTCATCAGAATCTTATGAAGGTTTTCTCAGCAGTTGGAAGTGTGAAGACTATCCGTACCTGTCCACCTCAAACCTCCAATAGTGGGGCTTCTTCGGCTTCGAGATTGGGAAAAGTTGATGGTTTGCCCTTATCTAACAAGTTGCATGCGTTTGTTGAATATGAATCTGTTGAGCTGGCTGAGAGAGCAGTTGCTGAGCTGAATGATGAGGGAAACTGGAGGAGTGGCCTCCGGGTTCGCCTAATGCTTAGACGCATGTCTAAACCATCCCAAGGCCGAGGAAAGAAGGGACTTGATGTTGAAGTTGGTTGTGACGAGGATTATACTTCTGTGCCTGAGCCACATGCAAGTGAGAAACAATTAGAAGATGCTTCCTTCCCTGATACTCAGTTCCATGAACATGTGGGAGAAGAGCATGGTTATGAAAAAGAGACTGGGCAAAGGAAAGGTCGTAATCGGGGCCGGGGCAAGGGACGTGGCCGAGTGCATTGTCATCAGAATAATCGTGTGGGAACACCCCCTTCAAATAATACAATTTTCACGGATCAAGTAATTGCCAAGCAACCCCCAGGGCCACGAATGCCGGATGGTACAAGAGGATTTTCAATGGGTAGGGGGAAGCCGGTAGCTGTTAATATAGCGTAA 1383 0.4613 MDQESLSETPDISPPSSTAQSQSDPSLSSNGSFSRLNAQAPEFVPTRATPRTDLQQPRLVVSPPPPASSMVHVYSLPHIPIQGHVVPVQNHHHNLGHQHHVPVHYRSHHHPHQYYVSSDPTVQQSQVDPDRISSSKSKLSDEASQKILNQVEYYFSDLNLATTDHLMKFINKDPEGFVPISVVASFKKIKALITSNPLLATVLRNSSKLVVSEDGKKIKRQYPLTESDIEELQSRIVVAENLPEDHCHQNLMKVFSAVGSVKTIRTCPPQTSNSGASSASRLGKVDGLPLSNKLHAFVEYESVELAERAVAELNDEGNWRSGLRVRLMLRRMSKPSQGRGKKGLDVEVGCDEDYTSVPEPHASEKQLEDASFPDTQFHEHVGEEHGYEKETGQRKGRNRGRGKGRGRVHCHQNNRVGTPPSNNTIFTDQVIAKQPPGPRMPDGTRGFSMGRGKPVAVNIA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g03084 460 CDD RRM_La_like_plant 235 329 IPR034878 GO:0003723
Phco7g03084 460 MobiDBLite consensus disorder prediction 113 141 - -
Phco7g03084 460 FunFam La ribonucleoprotein domain family member 7 135 226 - -
Phco7g03084 460 SMART la 141 221 IPR006630 -
Phco7g03084 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 332 IPR000504 GO:0003723
Phco7g03084 460 MobiDBLite consensus disorder prediction 1 64 - -
Phco7g03084 460 MobiDBLite consensus disorder prediction 381 460 - -
Phco7g03084 460 MobiDBLite consensus disorder prediction 114 141 - -
Phco7g03084 460 SUPERFAMILY RNA-binding domain, RBD 217 339 IPR035979 GO:0003676
Phco7g03084 460 MobiDBLite consensus disorder prediction 1 39 - -
Phco7g03084 460 PRINTS Lupus La protein signature 150 167 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco7g03084 460 PRINTS Lupus La protein signature 292 310 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco7g03084 460 PRINTS Lupus La protein signature 207 220 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco7g03084 460 PRINTS Lupus La protein signature 176 191 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco7g03084 460 PANTHER LUPUS LA PROTEIN-RELATED 18 444 IPR045180 -
Phco7g03084 460 MobiDBLite consensus disorder prediction 381 397 - -
Phco7g03084 460 SUPERFAMILY "Winged helix" DNA-binding domain 141 231 IPR036390 -
Phco7g03084 460 Gene3D - 134 225 IPR036388 -
Phco7g03084 460 Gene3D - 226 337 IPR012677 -
Phco7g03084 460 ProSiteProfiles La-type HTH domain profile. 137 228 IPR006630 -
Phco7g03084 460 MobiDBLite consensus disorder prediction 414 430 - -
Phco7g03084 460 Pfam La domain 147 205 IPR006630 -
Phco7g03084 460 CDD LARP_6 145 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g03084 Phco-Chr7 49289351 49299214 Dispersed/Transposed