Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g03047 ATGGACGCCTACTCCTCTGGAGAAGAAGTGGTTATTAAGACACGAAAACCATATACTATCACAAAGCAAAGAGAACGATGGACCGAGGAGGAACATAATAGATTTCTAGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCACATAGGAACGAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGTTGGAGAAAGAGGCCTTTGTAAAGGGTGTTCCAATAGGACAAGCTCTTGATATAGACATACCCCCCCCAAGGCCAAAAAGAAAACCTAGCAATCCTTATCCCCGGAAGACCAATGCTGGTGTCCCAACGTTACAAAATGGAGCAAAGAATGGAAAGTCTCTCATTTCAGTTGCATCTTTACATGGTAAACAAGCATTGGACTTGGAGAAAGAACCACTTCCAGAGAAGCATGGTGTGGACCTAAAAGAAAATAAGGACGAAAGCAGCTGGAAAGCATTTACCATTCTCCAGGAGGCACCTTGTTCATCAGTATCACTGCCGCTGAGAAATTCATGTGCCTTAAGGGACTTTATACCATCAATAAAAGAGGTAATAACTCTAGATGAAACGAATGAATCTTTTATTACTGATGAGCTTCAAAATCACAAGTTGGAGTTAGATGATGGAAAGCACACACAAAAGACTAATGACACCTGTAAAGTCTCTAAGTTGGAGAATTCTGGTGCTTTGAAATTGGTTCAAACTGAGAAAACAGATGCTCCTCATTGTGAATTAACAATAGATGGGATGCAAGGAAATCAGAATTACCCAAGACATGTCCACGTGCACGTTGTTGATGAGAACTTTGGAACTAGTAATCAAAATCCATCCCCAGACATGTTTGTTCAAGACTCCATGTTTAATGGGCATCCTAAGATTCTCACCAATTCTGCTGCATCAAACATAACTGAAAGTCAAAATAACACAGCACGGTCCTCTATTCATCAATCATGTCCTCCTTGCCCTCCCTTCACACAGCATAATCAGGATGATTACCATTCATTTCTTCACATGTCCTCCACCTTTTCAAATCTTATTGTCTCTACCTTGCTGCAAAACCCTGCTGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTCCGCTGATTCTCCAGTGTGCACTCAAGGTTTTCCATCTGGACGAATTGGCTCGCCTCCAACTGTGACAGCTATTACGGCTGCTACAGTAGCTGCCGCAACTGCATGGTGGGCTGCCCATGGACTGCTTCCTTTGTGTACTCCACTTCATACAGCCTTTGCGTTTCCTCCTGCATCAGCGACTGCAGCTCCATCCATGACTATTGGCGAATCACCACATAAAAACCAACAAGAAGAGGTTAAGCCACAAAATCCTCCTCTGCTAGATCAGATACTGGATCCAGAACAATCGGAAGTTCTGCAAGGTCAACACCCAGCTTCGAAGTCACCAGCTGTTTCTTCATCGGAATCTCAGGATAAGGGAGATACCAATGTAAATACTGCATCAAAGGCTACTAATCCTGAGATGAACCAAGCACTTTCTGAGAATCCCGATTCCGACAAAATGAACGGCAGAAAACCCGTAGACCGTTCCTCGTGTGGTTCTAACACAACCTCTAGCAGTGAAGAGACTGAGATACAGGAGAAGGATGAGAAAGAAAAGGAAGATCCCAACACACCTGATGCAAGCCTTTTAGGTACAGAGCCTAATAATCGTCGTAGTAGAAGCATTAGCAACCTTACTGAATCTTGGAAGGAGGTCTCTGAAGGGGGGCGGCTTGCCTTTCAGGCGCTATTCTCCAGGGAGGTGTTGCCACAAAGCTTTTCACCTCCTCATGCTTTGATAAATGCAGATAATCAGCTACACAGCATCAAAAACGCAGACTACAAAGATGAAGACCTTGAAACCAAAAAATGCAGTCCTAATTGTGATGTGCTGCAGAAAAGTCTGTTATTTGTCAAAGATAATCATGAGGAGGAGGGATTCCTAACCATAGGTCTTGGACAAGGAAAGCTGAAGAGTCGTCGAACAGGGTTTAAACCTTACAAAAGGTGTTCGGTAGAGGCAAAGGAAAACATGATCGGAACGGCCTGCAACCAAGGTGAAGAGAAAGGTCCCAAGAGAATACGCTTGAATGAGGAAGCTTCAACTTGA 2190 0.4388 MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAFVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTNAGVPTLQNGAKNGKSLISVASLHGKQALDLEKEPLPEKHGVDLKENKDESSWKAFTILQEAPCSSVSLPLRNSCALRDFIPSIKEVITLDETNESFITDELQNHKLELDDGKHTQKTNDTCKVSKLENSGALKLVQTEKTDAPHCELTIDGMQGNQNYPRHVHVHVVDENFGTSNQNPSPDMFVQDSMFNGHPKILTNSAASNITESQNNTARSSIHQSCPPCPPFTQHNQDDYHSFLHMSSTFSNLIVSTLLQNPAAHAAASFAATFWPYANAETSADSPVCTQGFPSGRIGSPPTVTAITAATVAAATAWWAAHGLLPLCTPLHTAFAFPPASATAAPSMTIGESPHKNQQEEVKPQNPPLLDQILDPEQSEVLQGQHPASKSPAVSSSESQDKGDTNVNTASKATNPEMNQALSENPDSDKMNGRKPVDRSSCGSNTTSSSEETEIQEKDEKEKEDPNTPDASLLGTEPNNRRSRSISNLTESWKEVSEGGRLAFQALFSREVLPQSFSPPHALINADNQLHSIKNADYKDEDLETKKCSPNCDVLQKSLLFVKDNHEEEGFLTIGLGQGKLKSRRTGFKPYKRCSVEAKENMIGTACNQGEEKGPKRIRLNEEAST 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g03047 729 Gene3D - 26 73 - -
Phco7g03047 729 PANTHER SWI/SNF COMPLEX-RELATED 7 567 - -
Phco7g03047 729 MobiDBLite consensus disorder prediction 481 530 - -
Phco7g03047 729 SMART sant 23 71 IPR001005 -
Phco7g03047 729 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Phco7g03047 729 MobiDBLite consensus disorder prediction 447 588 - -
Phco7g03047 729 MobiDBLite consensus disorder prediction 88 120 - -
Phco7g03047 729 MobiDBLite consensus disorder prediction 710 729 - -
Phco7g03047 729 MobiDBLite consensus disorder prediction 555 571 - -
Phco7g03047 729 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Phco7g03047 729 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Phco7g03047 729 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Phco7g03047 729 MobiDBLite consensus disorder prediction 715 729 - -
Phco7g03047 729 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Phco7g03047 729 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Phco7g03047 729 MobiDBLite consensus disorder prediction 449 468 - -
Phco7g03047 729 CDD SANT 26 69 IPR001005 -
Phco7g03047 729 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g03047 Phco-Chr7 49037799 49053388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco7g03047 Myb_DNA-binding 2.6e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g03047 7 49037799 49053388 Phco1g00518 1 4145246 4160148 PCT