Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g03040 ATGGGAGAAGTGGCGGGTGAGAAGTGTGTGATGCAGATGCAGGGGGAACAGAGCAACAATGCCTCCACGGTTCGGTGGGAACGTTTTCTGCCTCGGATGGTGCTCCGAGTGTTGCTTGTGGAAGCTGATGATTCTACTCGACAGATCATTGCTGCACTTCTACGTAAATGCAGTTACAAAGTTTCCACAGTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACTGAAGTGGATTTGCCATCAATATCTGGATTTTCACTTCTTAGTTTAGTCATGGAGCATGAAGTTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCATGATTCAGTTAGCATGGCGTTCAGATGCATGTTAAAAGGTGCGGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTGTGGAGATGGCATGTTATTGAACTTGGTTTTGCTGCAGAAAATCATGCTGCAAGCAATGATTCTAGCGGTTCTGTGGCTTCGGCACCAAGAAATAATGAATGCAACGAGAAAACAAGTGAATCTCAAGATATTTCACTGCTGAAGAGTTCTTCAAATTTGAGCGATATTGGCACAGTTAAGCATGAAAACTCTACAAAATGTGAAAGGGAATTAGATGAGCATAATGACGAAGCTGGAGCCAAATCAATATTTATACCAGAAGATGAAGGGTGCAACAAAACTTTTAAACCAACAGGCTTAAGGCTAGGTCAAGGCTATGATTTTGGTGAAATGAGAAATCAGGATGAAGTTCTAAGAATAGAGTTGAGCAAAGCCAATCCTGAGATTAATGTCGATATTCATGGATGTAGTGATGAATTGGAAGGCCCTTCTACTGGGGCCATTGACTTGATTGGTACATTCAAGACACTTCCAAAGAGCACTGATGAAAATTGTAGTTTCAGTAGTGGTAGTAACATTGCCAAGTTTGACTTTGATACACAATTGGAACTTTCTATAAGAAGATTTTTTCCTGGAAGCTCATACAAAGCTGTATCTGAGGAAAGGCAACTATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATGGTGGTAGTAAGTTGTTGCAGACCCTTTGTCCAACACCATCAACTATCTCTGCAAAATTAACAAACGGTAGTCATGATTCTCAGAAATCCCATAAGTTATCTGAAAACGCATCAACTTCTGATCAATGTGGTGCAGAAAATCAAATTAAGGAGAAAATCACCACTTCAGATATTTGTCAATCTGGACAAGTTGATCCAAATTTACCAAACAGTCAACTTGGACTTTTTCCTGCTACAGGGGTGACTTATGATCACAAGTCTACTGGAAATGGAAATGTCTTCCCTTCTATGCTTTATTCTCAATCAGTTGTCCATCCCATTTGGACTCCAAAATCAGTGTTCCAGAAAGAGAGCTCTCCATTTCCCACAAGTACTTCCTCCCAGTCTAATCCTCAACCTCGCAACTCAAAACATCATCACTGGTCTGACGATGCAACCCAGGCTTCTGATCAAAATGTAAATGGCCAAAGCCATTTGGATTTTGAGACACAGGACTCTCCGACTGCTAGTCAGAGTGCTGATACTGCTCTTTACCATGATACAACAAATCATAATTGTAGTGGCGTGTACAGAAGCTTAGGCTGCAGAAGTGAAGGAAATGCTACTTCAGCTAAGGTAGCCAAGGACAACCATGAAAGTGTCATTGATATTGGTCACCTCGGTTATGATGGATTCATAGGGACAGATTCTCATCGCACCAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTTAAGCGGAAAGACAGATGCTACGAGAAAAAGGTCCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAATTTGTTCGCCAAGTACACAGTGATCATCCAGTATCAGATCTGGGTGGTGATTCCTGA 1986 0.4174 MGEVAGEKCVMQMQGEQSNNASTVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVSTVCDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLSLVMEHEVCKNIPVIMMSSHDSVSMAFRCMLKGAADFLIKPVRKNELRNLWQHVWRWHVIELGFAAENHAASNDSSGSVASAPRNNECNEKTSESQDISLLKSSSNLSDIGTVKHENSTKCERELDEHNDEAGAKSIFIPEDEGCNKTFKPTGLRLGQGYDFGEMRNQDEVLRIELSKANPEINVDIHGCSDELEGPSTGAIDLIGTFKTLPKSTDENCSFSSGSNIAKFDFDTQLELSIRRFFPGSSYKAVSEERQLLNHSNASAFSRYGGSKLLQTLCPTPSTISAKLTNGSHDSQKSHKLSENASTSDQCGAENQIKEKITTSDICQSGQVDPNLPNSQLGLFPATGVTYDHKSTGNGNVFPSMLYSQSVVHPIWTPKSVFQKESSPFPTSTSSQSNPQPRNSKHHHWSDDATQASDQNVNGQSHLDFETQDSPTASQSADTALYHDTTNHNCSGVYRSLGCRSEGNATSAKVAKDNHESVIDIGHLGYDGFIGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHSDHPVSDLGGDS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g03040 661 CDD psREC_PRR 37 140 - -
Phco7g03040 661 ProSiteProfiles CCT domain profile. 605 647 IPR010402 GO:0005515
Phco7g03040 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 358 IPR045279 GO:0009736
Phco7g03040 661 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Phco7g03040 661 MobiDBLite consensus disorder prediction 632 646 - -
Phco7g03040 661 MobiDBLite consensus disorder prediction 171 196 - -
Phco7g03040 661 MobiDBLite consensus disorder prediction 632 661 - -
Phco7g03040 661 Pfam CCT motif 605 647 IPR010402 GO:0005515
Phco7g03040 661 MobiDBLite consensus disorder prediction 484 504 - -
Phco7g03040 661 MobiDBLite consensus disorder prediction 386 413 - -
Phco7g03040 661 MobiDBLite consensus disorder prediction 484 521 - -
Phco7g03040 661 SMART REC_2 35 150 IPR001789 GO:0000160
Phco7g03040 661 Gene3D - 33 240 - -
Phco7g03040 661 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Phco7g03040 661 SUPERFAMILY CheY-like 35 160 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g03040 Phco-Chr7 48978683 48982718 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Phco7g03040 Response_reg 4e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g03040 7 48978683 48982718 Phco1g00525 1 4246535 4251114 PCT