Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g03001 ATGAATGGCTCCGAGCAGCGTTTCTCTCTCTTCCGATTACAGCGTACCCGTCTCCGCAATCGGGTTGTCGGTGATGCAACTGTTGGTTTTGTGGTGAAAGAAGGAGGTGTTGGGGGCCAAAATTCGCCCTTGGTTTGTCTTGTTGTGATGGCACACGACTTAACGGGGCAGCTTGTTTGTTCAGAGATACATGGGTTTCATACCTTGCAGGATCTGGAAGTTACTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATGCTCAGTAATCACAAATATTTCAAGATCAATGCCAAGCCAGTGCATTTGCCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAACTTCAGAAAAGATGGTCACAATTGGAAAAAGAAAAGTGATGGGAAAACTGTTAAAGAAGCTCATGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGACAACCCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACAAAAGAGATACAATTGCAAAGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGTCTCTGATCCAGCTGCATCTTGGATTCCATCAGAAGACTTAGATTCTGGGACGAAAAGTGCTTACAGTCCTGAGCTTAATGTCAATTTAACAGTCAGAAGTTATGAACAGAAGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGCCAACACTTCTACTACATCTAGTGGAGGCAATGTTCCACGTTCAAATAACCAAAATCAAGGTTTACTGAGTGGAAGCTTTGGCAATGCATCCAGTACTCCTTCAGCAGAAGTTCCTTCTTTAGGTAATATAACTCAGTCAGTTTCTGGGAGCAATAGTGTTCCTTACGGTTTCTCAGAAACTGTTAATCTGCTTAAAAATAGTCCTACATCTCCCTCTGGCGTTGACACCTTGGGCACTTTGGTCAATGAAGGCTTGCAAAGTCAGGACAGCTTTGGAATGTGGATAAACAACATCATATCAGATACACCATGTTCCATGGACGAGTCAGCTCTTGAAACATCGATTTCTTCTGTTCATGAACCATATTCATCACTGGTGGCAGATAATCAGCTATCTACTCTGCCTGAACAAGTATTTAATCTCACAGAGGTGTCCCCTGCGTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCAAAGTAACTATCAACACCTTGCAAAGTTCAACCTAGTGTGTGTCTGTGGTGATGCAAGTTTTCCTGTAGAAATTGTTCAGGCTGGGGTTTACCGTTGCTGGGTATCACCACACTCCCCTGGATTGGTCAATATATATTTGAGCTTTGATGGCCACAAGCCTATTAGCCATGTTGTTAATTTTGAGTATCGTACTCCCATTTTGCATGATCCAACTGCAGCAATGGAAGAGAAATACAACTGGATCGAGTTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTACAGACAAGACCGTTGATATTTTCTCTAGTACAGTATCACCAAATGCAGTAAAAGAGGCTAGAAGATTTTCCTTCAAAACATCATTTATCTCCAAAAGCTGGCAATACTTCTTGAAGTCAGTTGATGACCAAACAACTCCGTTTTCACAAGTAAAAGATAGCTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTAGAACGAATTCTTGTAGGCTGCAAGAGTACTGAATATGATGCTCAAGGGCAAGGTGTTATTCACTTGTGTGCAGAACTTGGATATAATTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTCTCGCTAGATTTCCGTGACAAATTTGGATGGACAGCACTTCATTGGGCAGCTTATTGTGGAATGGAGAAAATGGTTGCAACTCTGCTGTCAGCTGGGGCAAGGCCAAACGTGGTCACAGATCCTACTCCGCAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAAGGGGTACGATGGGTTAGCTGCTTACCTTTCTGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATCTCAGTGGCACACTGGAATCTAGCATAACTGATCCAGTAAATACTGATGACCTTACTGAGGACCAGATGTACTTAAAGGAGACATTGGCAGCTTATCGTGTGGCTGCTGGGGCAGCAGCACGCATTCAAGCTGCATATAGGGAGCATTCTCTAAATTTAAAATACAAGGTAGTTGAATTTAGCAGTCCAGAGGATCAAGCGCGTCATATAGTAGCAGCAATGAAGATTCAACACGCCTTTCGCAACTATGAGACAAGGAGATCAAATGCAGCTGCTGTTCGAATTCAGCATAGATTCCGTACACGGAAACACCGTAGAGAATTTCTTAACATGCGGCGTCAGGCTATTAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGTCCGGAGGCAATATAAAAAAATCATATGGTCTGTTGGGGTGCTAGAGAAAGCAATTCTGCGATGGCGGTTAAAGAGAAAAGGCTTCCGTGGTCTCCAGGTTAATTCTGCTGAGGATGGGAAGCAGGAGGAGGGTGCAGAGGAGGATTTCTTTAGGACCGGCCTGAAACAAGCTGAAGAACGTGTCGAGAGGTCTGTCGTACGTGTGCAGGCCATGTTCCGATCTAAGAAAGCACAAGAAGAATATAGAAGAATGAAGCTAGCATATAGTCAAGCAAAGCTGGATCTGGAAGTTGAAGATTTCATCACTTCTGAAGTTGACCTGTTATCCGACATATAA 2877 0.4251 MNGSEQRFSLFRLQRTRLRNRVVGDATVGFVVKEGGVGGQNSPLVCLVVMAHDLTGQLVCSEIHGFHTLQDLEVTNTMEEAKSRWLRPNEIHAMLSNHKYFKINAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRCYWLLDKSLEHIVLVHYRETKEIQLQSSPVTPVNSNSSSVSDPAASWIPSEDLDSGTKSAYSPELNVNLTVRSYEQKLHEINTLEWDDLVVSNANTSTTSSGGNVPRSNNQNQGLLSGSFGNASSTPSAEVPSLGNITQSVSGSNSVPYGFSETVNLLKNSPTSPSGVDTLGTLVNEGLQSQDSFGMWINNIISDTPCSMDESALETSISSVHEPYSSLVADNQLSTLPEQVFNLTEVSPAWASSTEKTKVLVTGYFQSNYQHLAKFNLVCVCGDASFPVEIVQAGVYRCWVSPHSPGLVNIYLSFDGHKPISHVVNFEYRTPILHDPTAAMEEKYNWIEFRLQMRLAHLLFSTDKTVDIFSSTVSPNAVKEARRFSFKTSFISKSWQYFLKSVDDQTTPFSQVKDSLFEIALKNKLKEWLLERILVGCKSTEYDAQGQGVIHLCAELGYNWAISLFSWSGFSLDFRDKFGWTALHWAAYCGMEKMVATLLSAGARPNVVTDPTPQNPGGCTAADLAYMKGYDGLAAYLSEKSLVEQFNDMSLAGNLSGTLESSITDPVNTDDLTEDQMYLKETLAAYRVAAGAAARIQAAYREHSLNLKYKVVEFSSPEDQARHIVAAMKIQHAFRNYETRRSNAAAVRIQHRFRTRKHRREFLNMRRQAIKIQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNSAEDGKQEEGAEEDFFRTGLKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAYSQAKLDLEVEDFITSEVDLLSDI 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g03001 958 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Phco7g03001 958 FunFam calmodulin-binding transcription activator 5 574 714 - -
Phco7g03001 958 MobiDBLite consensus disorder prediction 202 219 - -
Phco7g03001 958 SMART CG_1_2 78 195 IPR005559 GO:0003677
Phco7g03001 958 MobiDBLite consensus disorder prediction 202 232 - -
Phco7g03001 958 ProSiteProfiles CG-1 DNA-binding domain profile. 74 200 IPR005559 GO:0003677
Phco7g03001 958 Pfam Ankyrin repeats (3 copies) 586 673 IPR002110 GO:0005515
Phco7g03001 958 SUPERFAMILY E set domains 408 495 IPR014756 -
Phco7g03001 958 ProSiteProfiles IQ motif profile. 831 855 IPR000048 GO:0005515
Phco7g03001 958 Coils Coil 921 941 - -
Phco7g03001 958 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 76 937 - -
Phco7g03001 958 SUPERFAMILY Ankyrin repeat 583 706 IPR036770 -
Phco7g03001 958 Gene3D - 569 713 IPR036770 -
Phco7g03001 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 858 IPR027417 -
Phco7g03001 958 Pfam CG-1 domain 80 193 IPR005559 GO:0003677
Phco7g03001 958 Gene3D - 807 855 - -
Phco7g03001 958 Gene3D Immunoglobulins 403 498 IPR013783 -
Phco7g03001 958 ProSiteProfiles Ankyrin repeat region circular profile. 644 673 - -
Phco7g03001 958 SMART ANK_2a 683 714 IPR002110 GO:0005515
Phco7g03001 958 SMART ANK_2a 644 673 IPR002110 GO:0005515
Phco7g03001 958 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Phco7g03001 958 ProSiteProfiles IQ motif profile. 789 818 IPR000048 GO:0005515
Phco7g03001 958 ProSiteProfiles IQ motif profile. 909 937 IPR000048 GO:0005515
Phco7g03001 958 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Phco7g03001 958 SMART iq_5 907 929 IPR000048 GO:0005515
Phco7g03001 958 SMART iq_5 830 852 IPR000048 GO:0005515
Phco7g03001 958 SMART iq_5 807 829 IPR000048 GO:0005515
Phco7g03001 958 MobiDBLite consensus disorder prediction 269 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g03001 Phco-Chr7 48706803 48718920 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco7g03001 CG-1 1.9e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g03001 7 48706803 48718920 Phco7g03001 7 48706803 48718920 ECH
Phco8g02170 8 23246570 23253403 Phco7g03001 7 48706803 48718920 PCT