Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02987 ATGAATCTCAGCAGCGGCAAGGGATCAACTTCCAGTTCTCCTCTGAAAACTGGGGAAGCCGTCTCCGACCAGTTTCCGGCTGGCCTCAGGGTCATGGTGGTGGATGATGATTCCACTTGCCTGAGGATACTTGAGAGGATGCTGAGTGTTTGTCTATATGAAGTGACGAAATGCAAGCGGGCTGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAAAACGGGTTTGATATTGTTTTGAGCGATGTGCATATGCCAGATATGGATGGATTCAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCAGCTGATGATGGAAAAAGTGTTGTGATGAAAGGGGTGACACATGGTGCCTGTGATTACCTAATTAAACCTGTGCGAATTGAGGCTTTGAAGAACATATGGCAGCATGTGATTCGGAAGAGAAAGAATGGGTTGAAAGATGTGGAGCAATCGGGTAGCGTGGAAGAAGGAGATCGGCTTCTAAAAGGATGTGATGATGGAGATTACTCATCTTCAGTGAATGAAGGCAGAGGCTCAAAGAAGAGGAGAGATGAGGAGGAGGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCACGAGTTGTTTGGTCTGTTGAGCTTCATCAGCAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCAGTTCCTAAAAAGATTTTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGACTGAGTGGAGTTTCACAGCAGCAGGGTAACTTGAACAACTCCTTCATCAGCTCACAAGATGCAACATTTGGGGCAACCTCAATCAATGGAATTCATCTTCAAACTCTTGCAGTTGCTGGTCAGCTTCCAGCACAAAGTCTAGCCAAGCTTCAAGCCGCAGCACTTGGCAGGACAACCGCTAAAGCTGGTGTGTCTATGCCTCTATCTGATCAAAAGAACATTTTCAGTTTTGAGAACCCAAGATTAAGATTTGCAGAAGGGTCACTGCATCATTTAAGCAACAGTAAACCAATAAACTTGCTTCATGGAATTCCTACCAACATGGAGCCAAAACAACTTGTCAATTTGCACCAATCTACCCAAACCCTTGGTAACTTGAACATGCGAGTCAATGCTCCTGCTGCGCAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATGCTGATTCTCATGTAGCCAGGTTTCCATCATCTTTGGTTCAGCCTACAGTACAAAATGGTATTTCTAATGGTGTTTTGGGAAATAGGATTACTGGCACAAGCAACCTAACTACTGCTTATAATACAGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATGAGCCAAACCAATGAAATGTCTGTCGATAGTTTTCCTCTTAGAAGCCCTCCAGGTATAACTAGTATCCCAACTAAAGGTATTTTTCATGAACAAGGTACCTCAGGCATTAAAGGACCTGGTGGATTTGTTCCAAGTTATGACATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAACACAGGCATAACATATGATTCTTCTCAGCATGCAAATCCTTTACAAGGCAATGTTGATGTCTCACCATCAGTTTTGGTCCATCAGGGTTTTCCCTGTATGCAACAGTCTGTACAAACTAGAGATGCCACTTCAATTGGAAAACCTCTGTTCTCCACAGGGGAAGGCATACATCCAGGTAATCACCAAAATGTTGGTCAACACCTCAATAACCTTGTTGGCAATTCAGTAAGGGTTAAGGCTGAAACATTTCATGATCCAAGCTCCCAGATTAATAACCTCTTCTCTGATCAGTATGGTCAGGAGGATCTTGTCACTGCATTTCTGAAACAGCAAGAAGGTGTAGGACCATCTGATAATGAGTTAGACTTTGATGGATATTCCTTAGACAACATTCCGGTTTAG 2019 0.4349 MNLSSGKGSTSSSPLKTGEAVSDQFPAGLRVMVVDDDSTCLRILERMLSVCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLKDVEQSGSVEEGDRLLKGCDDGDYSSSVNEGRGSKKRRDEEEEGDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLNNSFISSQDATFGATSINGIHLQTLAVAGQLPAQSLAKLQAAALGRTTAKAGVSMPLSDQKNIFSFENPRLRFAEGSLHHLSNSKPINLLHGIPTNMEPKQLVNLHQSTQTLGNLNMRVNAPAAQNNPLLMQMAQSQPRGQMLSENADSHVARFPSSLVQPTVQNGISNGVLGNRITGTSNLTTAYNTVPQNSSLLSFPMSQTNEMSVDSFPLRSPPGITSIPTKGIFHEQGTSGIKGPGGFVPSYDMFNELHHQKSHDWDLTNTGITYDSSQHANPLQGNVDVSPSVLVHQGFPCMQQSVQTRDATSIGKPLFSTGEGIHPGNHQNVGQHLNNLVGNSVRVKAETFHDPSSQINNLFSDQYGQEDLVTAFLKQQEGVGPSDNELDFDGYSLDNIPV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02987 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 337 IPR045279 GO:0009736
Phco7g02987 672 SUPERFAMILY CheY-like 28 149 IPR011006 -
Phco7g02987 672 MobiDBLite consensus disorder prediction 152 204 - -
Phco7g02987 672 MobiDBLite consensus disorder prediction 152 172 - -
Phco7g02987 672 Gene3D - 29 160 - -
Phco7g02987 672 Gene3D - 204 266 - -
Phco7g02987 672 MobiDBLite consensus disorder prediction 182 204 - -
Phco7g02987 672 FunFam Two-component response regulator 29 166 - -
Phco7g02987 672 CDD REC_typeB_ARR-like 31 145 - -
Phco7g02987 672 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Phco7g02987 672 FunFam Two-component response regulator 203 266 - -
Phco7g02987 672 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Phco7g02987 672 SMART REC_2 29 141 IPR001789 GO:0000160
Phco7g02987 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Phco7g02987 672 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Phco7g02987 672 PIRSF RR_ARR_type-B 6 664 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phco7g02987 672 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Phco7g02987 672 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02987 Phco-Chr7 48584943 48588209 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco7g02987 Response_reg 3.9e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02987 7 48584943 48588209 Phco7g02987 7 48584943 48588209 ECH
Phco8g02184 8 23430774 23434043 Phco7g02987 7 48584943 48588209 PCT