Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02853 ATGGAGAAAGAGAGATCATCAGGAGAGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGACCATGGGGTAAGTTTGGAGCAGAGATTAGAGATCCAACAAAACCTACGGGAAGGCAATGGTTGGGGACATTTGACACTGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCGATCCTTAATTTTCCCGATGAGTATTATTCTCATCTTCCTTTTGTATTCTCAAATTCTTCTACTAAGGACAATGAAACTTCTTTTGCTATGAAGGAAGTTATTGAGTTCGAGTATTTGGATAACAAGGTGTTGGAGGATCTTCTTGAGATAGAAGAGATGAGAAGGAATAATAAAGATTAG 378 0.4101 MEKERSSGEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFVFSNSSTKDNETSFAMKEVIEFEYLDNKVLEDLLEIEEMRRNNKD 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02853 125 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Phco7g02853 125 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Phco7g02853 125 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Phco7g02853 125 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Phco7g02853 125 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Phco7g02853 125 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Phco7g02853 125 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Phco7g02853 125 SUPERFAMILY DNA-binding domain 13 73 IPR016177 GO:0003677
Phco7g02853 125 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Phco7g02853 125 PANTHER DNA-BINDING DOMAIN 5 115 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02853 Phco-Chr7 47590063 47590440 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco7g02853 AP2 4.6e-12 CL0081