Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02810 ATGGAGTGGGACAGCAATTCCGATCTCAGTGGCGACGACGACGCCGTTTCCTTCCTCCTCAACGACGACGATGACGACGTCGTCGGCCCCCTCCCCTTTCCCGTCCTCCAAACCGCCCCCTGCGGCTTCGTCGTCACCGACGCGCTTGAGCCCGACCACCCTATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGCTACCGCGCAGAAGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAATTGTTGTTTCAGAGATTAGAAGATGCCTTGATGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAAATTGCGTCTGACGCCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAAGCAAACATTGATCTTGGTCCCCTCCCGGGTTCTACACTTAAGGAATCTACCAAATCATCAGATCGATTTCATTCTGTGCTTTCCTCATTGAATCCTCTTCCAGTAGGGGACCGTAATGTTACTCGTGGACTTTGTGGGATATTGCAAATAAGTGACGAGGTATTGTCTCTCAAGATACTTGCTCTCTTGACTCCAAGAGATATTGCATCAGTTGGCTCTGTTTGTAGGCGATTGTATGAACTAACAAAAAATGAAGATCTTTGGAGAATGGTGTGTCAAAATGCATGGGGCAGTGGGACTACACGTGTTTTAGAGACAGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACTACTCTTGAAGCAGCAGCATGGAGAAAACTGACTGTTGGAGGTTCTGTTGAACCTTCACGATGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTACTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATCTCTGGACTGGCACCTCCCCTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGCGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTCCTTGATCTCTCTATGGAGAAACCTGTCTGGAGAGAGATACCAGTAGCCTGGACTCCACCTTCACGTTTGGGTCACACACTGTCCGTTTATGGTGGTAGAAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGCTCCAGTGATGTATTCACTATGGATTTAAGTGAAGAGGAGCCATGTTGGAGGTGTGTAACAGGGAGTGGAATGCCAGGAGCTGGAAATCCAGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGACCCGACTGATGAGAAGCCTACATGGAGAATCCTGAATGTACCCGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCTAGTTCTGTCATCTAA 1839 0.4856 MEWDSNSDLSGDDDAVSFLLNDDDDDVVGPLPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSIVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNKLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSTLKESTKSSDRFHSVLSSLNPLPVGDRNVTRGLCGILQISDEVLSLKILALLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSGTTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGSVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02810 612 SUPERFAMILY F-box domain 194 260 IPR036047 GO:0005515
Phco7g02810 612 CDD PAS 39 141 IPR000014 -
Phco7g02810 612 SUPERFAMILY Kelch motif 443 606 IPR015915 GO:0005515
Phco7g02810 612 Pfam Galactose oxidase, central domain 358 407 - -
Phco7g02810 612 SUPERFAMILY Kelch motif 282 500 IPR015915 GO:0005515
Phco7g02810 612 ProSiteProfiles PAS repeat profile. 35 110 IPR000014 -
Phco7g02810 612 FunFam Putative LOV domain-containing protein 273 477 - -
Phco7g02810 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Phco7g02810 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Phco7g02810 612 Gene3D - 198 244 - -
Phco7g02810 612 Gene3D PAS domain 33 160 - -
Phco7g02810 612 FunFam Putative LOV domain-containing protein 478 611 - -
Phco7g02810 612 Pfam Galactose oxidase, central domain 296 346 - -
Phco7g02810 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 149 IPR035965 -
Phco7g02810 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 32 609 - -
Phco7g02810 612 Pfam PAS domain 40 149 IPR000014 -
Phco7g02810 612 FunFam Adagio protein 1 197 244 - -
Phco7g02810 612 NCBIfam PAS domain S-box protein 52 148 IPR000014 -
Phco7g02810 612 Gene3D - 273 476 IPR015915 GO:0005515
Phco7g02810 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Phco7g02810 612 CDD F-box_AtADO-like 199 245 - -
Phco7g02810 612 Gene3D - 477 610 IPR015915 GO:0005515
Phco7g02810 612 FunFam Adagio protein 1 33 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02810 Phco-Chr7 47204709 47212488 Dispersed/Tandem