Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02809 ATGGAGTGGGACAGCGATTCCGATCTCAGCGCCGACGACGACGCCGCTTCCTTTCTCCTCAACCACGACGATGACGACGTCGCCGGACCCATCCCCTTCCCCATCCTCCAGACGGCGCCCTGCGGCTTCGTCGTCACCGACGCGCTTGACCCAGACCACCCAATCATATACGTCAACGCCGTTTTCGAGATGATCACCGGTTACCGTGCAGAAGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCCACTGTTGTTTCAGAGATTAGAAGATCCCTTGATGAAGGGGTTGAATTTCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACCGATTGCATCTAACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGACAAACGTTGATCTTGGTCCCCTTCCTGGTTCTAAGATTAAGGAATGTACTAAATCATCAGATCAGTTTCTTTCGGTGCTTTCCTCATTGAATCCTCTTCATGTTGGCGACCGTAATGTTAATCGTGGAGTTTGTGGAATTTTGCAACTAAGTGATGAAGTATTGTCTCTCAAGATACTTTCTCGCTTGACTCCAAGAGATATTGCATCTGTTGGTTCTGTTTGTCGGCAGTTGTATGAGCTAACAAAAAATGAAAGCCTTTGGAGAATGGTTTGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTGGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGATGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTTCTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCATTTGGTTGTGTTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAACCTCCAACTTGGCGTGAAATCTCTGGATTGGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGTTGATTGTTTCTGGTGGCTGTGCTGATTCTGGTGTACTCTTGAGTGATACTTTTCTCCTTGATCTCTCGATGGAGAAACCTGTCTGGAGAGAGATACCAGTAACATGGACTCCACCTTCACGTCTGGGTCACACACTATCAGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTGCGTTTTCGCTCCAGTGATGTATTCATGATGGATTTAAGTGAGGACGAGCCATGTTGGAGGTGTGTAACGGGGAATGGAATGCCGGGTGCTGGAAATCCAGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATCCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGATCCGACTGATGAGAAGCCCACATGGAGAGTCCTAAATGTACCTGGGTGCCCTCCTAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTTGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGATCTCCATGAACTGTCCTTGGCATGTTCTAACATTGGTGTCTTAGGTCGATTGGAGGTTGCATTTTATTTTAAGCTAAATTGCTCGCCACTCGTTTTATGCCTTCTCAATCTCATCATCGAATTCCACTCTTCCACCCTCTCAACAACACAGACTAATCAACACAACCAAACGCAACGCAACACAACAACGCTACTTCAAACCTTCAAAGCGTCACTTCTCACAAACTCTCTCTCCGATTCCCACCGCTCCCTTCTCCACGCGCGCCCCATGGGATGA 2079 0.48 MEWDSDSDLSADDDAASFLLNHDDDDVAGPIPFPILQTAPCGFVVTDALDPDHPIIYVNAVFEMITGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRSLDEGVEFQGELLNFRKDGSPLMNRLHLTPIYGDDEITHVIGIQFFTETNVDLGPLPGSKIKECTKSSDQFLSVLSSLNPLHVGDRNVNRGVCGILQLSDEVLSLKILSRLTPRDIASVGSVCRQLYELTKNESLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFMMDLSEDEPCWRCVTGNGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRVLNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLACSNIGVLGRLEVAFYFKLNCSPLVLCLLNLIIEFHSSTLSTTQTNQHNQTQRNTTTLLQTFKASLLTNSLSDSHRSLLHARPMG 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02809 692 ProSiteProfiles PAS repeat profile. 35 110 IPR000014 -
Phco7g02809 692 FunFam Adagio protein 1 33 160 - -
Phco7g02809 692 CDD PAS 39 141 IPR000014 -
Phco7g02809 692 Gene3D - 196 244 - -
Phco7g02809 692 Pfam Galactose oxidase, central domain 296 346 - -
Phco7g02809 692 SUPERFAMILY F-box domain 192 261 IPR036047 GO:0005515
Phco7g02809 692 NCBIfam PAS domain S-box protein 36 148 IPR000014 -
Phco7g02809 692 FunFam Putative LOV domain-containing protein 273 477 - -
Phco7g02809 692 FunFam Adagio protein 1 197 244 - -
Phco7g02809 692 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 149 IPR035965 -
Phco7g02809 692 Gene3D - 273 477 IPR015915 GO:0005515
Phco7g02809 692 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 31 608 - -
Phco7g02809 692 FunFam Putative LOV domain-containing protein 478 611 - -
Phco7g02809 692 SUPERFAMILY Galactose oxidase, central domain 283 597 IPR011043 -
Phco7g02809 692 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Phco7g02809 692 Pfam Kelch motif 453 501 IPR011498 GO:0005515
Phco7g02809 692 Gene3D PAS domain 33 160 - -
Phco7g02809 692 Pfam Galactose oxidase, central domain 360 407 - -
Phco7g02809 692 CDD F-box_AtADO-like 199 245 - -
Phco7g02809 692 Pfam PAS domain 40 149 IPR000014 -
Phco7g02809 692 Gene3D - 479 623 IPR015915 GO:0005515
Phco7g02809 692 Pfam F-box-like 208 246 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02809 Phco-Chr7 47198345 47204674 Tandem