Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02808 ATGGAGGGTACCCTCTTCCCCAATCGCCCTGTTTTACCTGCGCCTGCACCTGCACCTGCACCTGCACCAAGATCAACCCCACAACCTTCAAAATTCAAGCCAACTTTTTTACCTCCACAATCTCCACCACCTCCTCCTCCTTCTTTCCAATTGGATTCCCTTCTCCAACATCTTCAGCATCTCTCTTCAGTTCCCATCACCACTCCCACGCTCACCCTTGTGCCTCTTTCTAAGGATAACGACATCCATTTTAACAACTCCCTCCATTCAAAGCACCCCTCTTTAGCTTCTGGCCCCGTAGTTGACCAGGACCAGCTTCATGATGCAAAGGTTGGATTTTTATCCGACAAGGGTAAGTTGTTGCTCAATTCAATTGTTGGGTCACCTTTGCATGAATTGAATGGTTTTTTCAACTCTGTTGAGTTTGAATTGCTTGAGGTTGATTTTCTCAGCCTGTTGAAAGCTTTGGACCTTTCTGGGAACTGGGAGAGGGCTCTTTTGCTGTTTGAATGGGGTTGGTTGCATTTTGGGAGTGAGCAAAATTTGAGGTTGGACAATCAGGTTGTTGAATTGATGATTCGGATATTGGGGCGAGAGTCACAGCATTCTATTGCATCCAAGTTGTTTGATTTAATTCCTGTTGAGCAATACTCCCTTGATGTCCGGGCTTACACCACTGTTCTTCATGCTTATGCTCGCACTGGCAAGTATAAACGGGCTATTGAGTTGTTTGAAAAGATGAATGAGTTCGGTCTTGGTCCAACTTTGGTCACTTACAATGTTATGCTTGATGTTTATGGCAAGATGGGTCGTTCTTGGAGTAGAATATTGGAGTTGTTGGATGAGATGAGGAGTAAAGGGCTTGAGTTTGATGAGTTTACCTGCAGCACTGTGATTTCTGCTTGTGGGAGAGAAGGCATGCTAGATGAAGCTAGAAAGTTTTTCGCTGAATTGAAATTGAATGGCTATAAACCAGGAACTGTTACGTATAATTCTATGCTGCAGGTTTTTGGGAAGGCTGGAGTATACACTGAGGCTTTGAGCATCTTGAAAGAAATGGAGGATAATAATTGCCCTCCTGATTCTGTCACCTACAATGAGCTCGCGGCAACATATGTAAGAGCTGGGTTTCTCGACCAAGGGAAGGCTGTGATAGATACAATGACAAGCAAAGGGGTAATGCCAAATGCTATTACTTATACAACTGTAATAGATGCTTATGGTAAGGCTGGAAGGGAGGATGAGGCATTAAGGTTGTTCAGCCAGATGAAGGACTTGGGTTGTGCTCCCAATGTATACACTTACAACTCTGTTCTTGCCATGCTAGGCAAGAAGTCAAGAACAGAAGATGTTATTAAGGTTCTCTCTGAGATGAAATTGAGTGGATGTGCTCCTAATCGTGCTACATGGAACACAATGCTTGCTGTATGCAGTGAGGAGGGGAAACACAGTTATGTTAATAGGGTCTTAAGGGAAATGAAAAACTGTGGATTTGAGCCTGACAAAGACACATTCAATACATTGATTAGTGCATATGCTCGGTGTGGATCTGAAGTTGATTCTGCAAAAATGTATGGGGAAATGATTAAAGCAGGCTTTACACCATGTGTAACAACTTATAATTCTCTTCTAAATGCCCTTGCTCGGCTAGGCAATTGGAAAGCAGCAGAATCAGTAATTATAGACATGCGGAGTAAGGGCTTCAAGCCTAATGAGACTTCATACTCACTGTTACTCCATTGTTATTCCAAGGCTGGGAATGTCAAGGGGATAGAGGCGATTGAGAAAGAAATTTATGATGGTCATGTCTTTCCTAGTTGGATTCTTTTGAGAACCCTTGTCCTATCAAACCACAAGTGCAGACACCTTAAGGGAATGGAAAGGGCATTTGAACAATTGCAAAAGTACGGATACAAACCTGATTTGGTTGTCATTAACTCCATGCTTTCAATGTTTTCCCGGAACAAGATGTTTTCGAAGGCCCACGAAATGATGCATTTTATTCGTGAAAATGGATTGCAGCCAAATCTTTTCACCTATAACTGCTTGATGGATTTGTATGTCCGAGAGGGTGAGTGTTGGAAAGCAGAAGAAATACTCAAGGGAATTCAAAACTCTGGTCCAGAGCCAGATGCTGTGTCTTATAATACTGTTATCAAGGGGTTTTGTAGAAAAGGGCTAATGCAGGAGGCTATTAGAGTTCTCTCAGAGATGACCACTAAGGGGATTCAACCAACAATAGTTTCATACAATACTTTCTTATCAGGCTATGCAGGGATGGAGTTGTTTGATGAAGCAATTGAAGTCATTAGATTTATGATTGAGCACAATTGCAGGCCCAATGAACTAACTTACAAGATTGTAGTTGATGGTTATTGCAAAGCAGGGAAGCATGAGCAAGCGATGGACTTTGTGTCTAAGATTAAGGAGATTGATATCTCTTTTGATGATCGTTCTGTTAAAAGACTAGGTTCTTGTATTAGGGAGAGAATGGGGTCTGTTTTGTGA 2508 0.4226 MEGTLFPNRPVLPAPAPAPAPAPRSTPQPSKFKPTFLPPQSPPPPPPSFQLDSLLQHLQHLSSVPITTPTLTLVPLSKDNDIHFNNSLHSKHPSLASGPVVDQDQLHDAKVGFLSDKGKLLLNSIVGSPLHELNGFFNSVEFELLEVDFLSLLKALDLSGNWERALLLFEWGWLHFGSEQNLRLDNQVVELMIRILGRESQHSIASKLFDLIPVEQYSLDVRAYTTVLHAYARTGKYKRAIELFEKMNEFGLGPTLVTYNVMLDVYGKMGRSWSRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFFAELKLNGYKPGTVTYNSMLQVFGKAGVYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDQGKAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDEALRLFSQMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLSEMKLSGCAPNRATWNTMLAVCSEEGKHSYVNRVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMIKAGFTPCVTTYNSLLNALARLGNWKAAESVIIDMRSKGFKPNETSYSLLLHCYSKAGNVKGIEAIEKEIYDGHVFPSWILLRTLVLSNHKCRHLKGMERAFEQLQKYGYKPDLVVINSMLSMFSRNKMFSKAHEMMHFIRENGLQPNLFTYNCLMDLYVREGECWKAEEILKGIQNSGPEPDAVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVSYNTFLSGYAGMELFDEAIEVIRFMIEHNCRPNELTYKIVVDGYCKAGKHEQAMDFVSKIKEIDISFDDRSVKRLGSCIRERMGSVL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 290 IPR002885 -
Phco7g02808 835 PANTHER OS03G0856100 PROTEIN 729 810 - -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Phco7g02808 835 Pfam PPR repeat 293 322 IPR002885 -
Phco7g02808 835 Gene3D Tetratricopeptide repeat domain 609 705 IPR011990 GO:0005515
Phco7g02808 835 Gene3D Tetratricopeptide repeat domain 458 608 IPR011990 GO:0005515
Phco7g02808 835 Gene3D Tetratricopeptide repeat domain 272 389 IPR011990 GO:0005515
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Phco7g02808 835 MobiDBLite consensus disorder prediction 1 48 - -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 711 745 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Phco7g02808 835 SUPERFAMILY TPR-like 220 557 IPR011990 GO:0005515
Phco7g02808 835 Pfam Pentatricopeptide repeat domain 219 269 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Phco7g02808 835 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 271 373 - -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Phco7g02808 835 Pfam PPR repeat 777 807 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 223 255 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 257 291 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 713 746 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 504 535 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 748 782 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 328 362 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 539 572 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 398 432 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 784 810 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 678 712 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 469 501 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 433 466 IPR002885 -
Phco7g02808 835 NCBIfam pentatricopeptide repeat 643 676 IPR002885 -
Phco7g02808 835 Gene3D Tetratricopeptide repeat domain 390 457 IPR011990 GO:0005515
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Phco7g02808 835 MobiDBLite consensus disorder prediction 10 48 - -
Phco7g02808 835 Gene3D Tetratricopeptide repeat domain 126 271 IPR011990 GO:0005515
Phco7g02808 835 Gene3D Tetratricopeptide repeat domain 706 830 IPR011990 GO:0005515
Phco7g02808 835 Pfam PPR repeat family 465 514 IPR002885 -
Phco7g02808 835 Pfam PPR repeat family 640 686 IPR002885 -
Phco7g02808 835 Pfam PPR repeat family 325 366 IPR002885 -
Phco7g02808 835 Pfam PPR repeat family 395 442 IPR002885 -
Phco7g02808 835 Pfam PPR repeat family 535 583 IPR002885 -
Phco7g02808 835 Pfam PPR repeat family 710 758 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 781 815 IPR002885 -
Phco7g02808 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02808 Phco-Chr7 47182166 47184673 Dispersed