Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02807 | ATGGAAGTTTCTACGGAGCCGCCGTCTAGTGGCGCCGGCGAAACCATAAGCAACTCGAATGCACTGAAGCGAGAACTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCAAAGCCAAAAAGGTACTTCTTTTTCAGCAACTGAAATGCAGTGGGCTAAGAATAACAAATCTGCTCCTGTTGATGAGGATAGTATGGACCCGACTCAATACCTTGAGAATAGGCTGAAGTATCTTGCAGTTCAAAAGGCAGAAGGCAGAAATCCATATCCCCACAAATTCTTTGTCACTATGTCCCTTGATGAATACATTAAGGAATATGGAGGTTTAAGTGAAGGGCAGCACCTTGAGGATGTTTCTGTGTCTTTGTCTGGTCGGATCATGCACAAGCGCACATCTGGTTCTAAGCTTGTCTTTTATGACCTGCATGGTGGTGGTTTCAAGGTCCAGGTTATGGCTGATGCGAGTAAATCAGACTTGAATGAGGCTGACTTTTCCATATTCCATTCTAATGTGAAGCGTGGTGACATAGTCGGTATCACTGGATTTCCCGGAAAAAGTAAGAAGGGTGAACTTAGTATTTTTCCGAAGACTTTTGTGGTGCTGTCTCATTGTTTGCATATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTGATAATGCGAATTTGAAGAGAAATCCATGGGTACCAGGAAGTACCAGGAATCCTGAAATATATGTTTTGAAGGATCAGGAGACTAGATATCGCTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTTAAGACCAGATCTAAAATCATTTCTTACATTAGGAGCTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGGTTGCTGGTGGAGCTGCAGCACGCCCATTTGTAACCCATCACAATGACCTTAACATGAGGCTATTCATGAGGATTGCTCCAGAACTGTATCTCAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTCATGAAATTGGCAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACTTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATATAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAACTTACAAAGGGAAGCTATAAAATCAAGTATCATGCTGATGGGATTGACAAGGAACCTATTGAAATTGATTTTACTCCACCTTTCAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGCCTCAGTATTCCCAAAGACTTGTTGAGTGAGGAAGCTAATCAATATTTGAAGGACGCATGCTTGAAGTATGAGATCAAATGTCCACCTCCTGAGACAACTGCACGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAATCGTGTGTAAATCCTACATTCATCATAAATCATCCTGAGATAATGAGTCCTTTAGCAAAATGGCACAGATCAAGGCCAGGCCTGACCGAACGTTTTGAATTATTTATTAATAAACATGAGCTTTGCGATGCGTATACTGAACTGAACGACCCTGCAGTACAACGACAGAGATTTGCCGAACAACTCAAAGATCGGCAATCAGGTGATGATGAAGCAATGACCTTAGATGAAACATTTTGCATGGCTCTGGAGTATGGCTTGCCACCTACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACCATGTTATTGACAGATTCACAGAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGA | 1791 | 0.4193 | MEVSTEPPSSGAGETISNSNALKRELKNKQREEERKQSQKGTSFSATEMQWAKNNKSAPVDEDSMDPTQYLENRLKYLAVQKAEGRNPYPHKFFVTMSLDEYIKEYGGLSEGQHLEDVSVSLSGRIMHKRTSGSKLVFYDLHGGGFKVQVMADASKSDLNEADFSIFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAADNANLKRNPWVPGSTRNPEIYVLKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRSFLDDLDFLEVETPMMNMVAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVHEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDITEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTPPFRRIDMIEELEKMAGLSIPKDLLSEEANQYLKDACLKYEIKCPPPETTARLLDKLVGHFLEESCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFINKHELCDAYTELNDPAVQRQRFAEQLKDRQSGDDEAMTLDETFCMALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD | 596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02807 | 596 | MobiDBLite | consensus disorder prediction | 24 | 39 | - | - | |
| Phco7g02807 | 596 | Hamap | Lysine--tRNA ligase [lysS]. | 73 | 595 | IPR002313 | GO:0004824|GO:0005524|GO:0006430 | |
| Phco7g02807 | 596 | Pfam | OB-fold nucleic acid binding domain | 120 | 197 | IPR004365 | GO:0003676 | |
| Phco7g02807 | 596 | SUPERFAMILY | Nucleic acid-binding proteins | 65 | 209 | IPR012340 | - | |
| Phco7g02807 | 596 | CDD | LysRS_N | 119 | 254 | IPR044136 | GO:0000166 | |
| Phco7g02807 | 596 | FunFam | Lysine--tRNA ligase | 238 | 596 | - | - | |
| Phco7g02807 | 596 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 264 | 594 | IPR006195 | - | |
| Phco7g02807 | 596 | FunFam | Lysine--tRNA ligase | 67 | 210 | - | - | |
| Phco7g02807 | 596 | SUPERFAMILY | Class II aaRS and biotin synthetases | 242 | 593 | IPR045864 | - | |
| Phco7g02807 | 596 | Coils | Coil | 16 | 39 | - | - | |
| Phco7g02807 | 596 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
| Phco7g02807 | 596 | Gene3D | - | 68 | 210 | IPR012340 | - | |
| Phco7g02807 | 596 | PRINTS | Lysyl-tRNA synthetase signature | 295 | 311 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco7g02807 | 596 | PRINTS | Lysyl-tRNA synthetase signature | 279 | 289 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco7g02807 | 596 | PRINTS | Lysyl-tRNA synthetase signature | 324 | 337 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco7g02807 | 596 | PRINTS | Lysyl-tRNA synthetase signature | 477 | 493 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco7g02807 | 596 | PRINTS | Lysyl-tRNA synthetase signature | 342 | 359 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco7g02807 | 596 | Gene3D | Bira Bifunctional Protein; Domain 2 | 238 | 596 | IPR045864 | - | |
| Phco7g02807 | 596 | NCBIfam | lysine--tRNA ligase | 67 | 595 | IPR002313 | GO:0004824|GO:0005524|GO:0006430 | |
| Phco7g02807 | 596 | PANTHER | LYSYL-TRNA SYNTHETASE | 18 | 596 | - | - | |
| Phco7g02807 | 596 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Phco7g02807 | 596 | CDD | LysRS_core | 257 | 594 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco7g02807 | 596 | Pfam | tRNA synthetases class II (D, K and N) | 242 | 592 | IPR004364 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Phco7g02807 | 596 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
| Phco7g02807 | 596 | PIRSF | LysRS2 | 8 | 596 | IPR034762 | GO:0004824|GO:0005524|GO:0006430 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02807 | Phco-Chr7 | 47174579 | 47180465 | Dispersed |