Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02798 | ATGGCTACCTTCGCGGTAGCAACAACCTATTCACCTTCTTCCGTCTCTCCCCTTAAAGCGCGCCGTTTTGGTTTTGATTTTGGTTCCTTCCTTTCTTCCACCACCAAACTAAAATGCCCCTCAATCACCACCACCACCACACTACCAGTCGCCACCCACCCTACGGTTTCTGTCAACCCCAGCTCCAACTCCAACTCCAACCACCTTGTTCTGCCTTCTAACGAATCATCGGAGAGGCTTCTCAGAGTCCGCCACACGTGTGCGCATGTTATGGCAATGGCTGTTCAAAAGCTATACCCTGATGCAAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTACGACTTCGATATGGAGCCTTTGACCGATAAAGATTTGAAGAGAATCAAGAAAGAGATGGATCGGATTATTGGAAGAAATTTACCTCTTCTAAGAGAAGAAGTCTCAAGAGACGAAGCTCATAAAAGAATATCGGCATTGAATGAACCATACAAGTTGGAGATTTTGGAAAGCATTAAGGAGGATGCCATCACCATATATCATATTGGTGACGAATGGTGGGACCTTTGTGCTGGACCTCATGTTGAATCTACTGGAAATATCAATAAGAAAGCAGTTGAACTTGAGTCTATTGCTGGAGCATACTGGAGAGGAGATGAAAGAAAACCAATGCTTCAAAGGATATATGGTACTGCATGGGAAAATGAAGAGCAGTTAAAAGCTTACCTTCATTTCAAAGAGGAAGCTAAGCGTCGAGATCACAGGCGCATAGGGCAAGATCTTGATTTGTTTTCTATACAGGATGATGCTGGTGGGGGTTTAGTTTTCTGGCACCCGAAGGGAGCTCTTGTTAGACACATAATTGAAGATTTCTGGAAAAATATTCACTTGAAATGTGGCTATGATCTGCTGTACACACCACATGTGGCAAAAGCTGATCTTTGGAAGATCAGTGGTCATTTAGACTTCTACAAAGAGAATATGTATGATCAGATGGACATTGAAGATGAGCCTTATCAGCTCCGACCTATGAATTGTCCTTATCATATTTTGGTGTACAAAAACAAGCTTCATTCCTATCGTGATTTTCCAATTAGGGTGGCAGAACTGGGAACTGTCTATAGATATGAACTATCTGGAAGTTTACATGGCCTTTTCCGTGTTAGAGGTTTCACACAGGATGATGCACATATATTTTGTTTAGAGGACCAGATTAAAGATGAGATCAGGGGGGTCCTAGATCTTACTGAACAAATATTGTTGCAGTTTGGTTTTGACAAGTATGAAGTAAATTTATCCACAAGGCCTGAAAAGGCTGTGGGAGATGATGATATATGGGAGAAAGCTACATCCGCTTTAGAAGATGCTTTGGATGGTAAAGGTTGGAGTTATCAAATTGATGATGGAGGAGGCGCCTTTTATGGGCCAAAGATTGATATCAAGATTGAGGATGCTCTTGGTAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATCTACCACAGCGTTTTGACATCACATATGTTGACTCAAATACTGAGAAAAGGAGGCCCATAATGATCCATAGAGCAGTGCTTGGATCATTGGAAAGATTCTTTGGTGTTCTCATTGAGCATTATGCTGGTGATTTTCCATTATGGCTTTCTCCAATACAAGCTCGAGTTTTACCTGTTACTGATGCCCAGCTTGAATATTGCAATAGTGTGGCCAACAAACTGAAAATGTATGGCATCAGAGTAGAAGTTTGCCATGGAGAGCGCCTACCTAAACTCATAAGAAATGCAGAGAAGCAGAAAATTCCATTGATGGCTGTTGTTGGCTCAAAGGAAGTTGAAACAGAAACAGTCACAGTTAGATCTAGGTTTGGTGGGGAGCTTGGGACTATGTCAGTTGATGACTTTATTAATAGAATTAAATTGGCATCAGAAAACCCAAGATCATTATGA | 1956 | 0.4162 | MATFAVATTYSPSSVSPLKARRFGFDFGSFLSSTTKLKCPSITTTTTLPVATHPTVSVNPSSNSNSNHLVLPSNESSERLLRVRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIGRNLPLLREEVSRDEAHKRISALNEPYKLEILESIKEDAITIYHIGDEWWDLCAGPHVESTGNINKKAVELESIAGAYWRGDERKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRIGQDLDLFSIQDDAGGGLVFWHPKGALVRHIIEDFWKNIHLKCGYDLLYTPHVAKADLWKISGHLDFYKENMYDQMDIEDEPYQLRPMNCPYHILVYKNKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEQILLQFGFDKYEVNLSTRPEKAVGDDDIWEKATSALEDALDGKGWSYQIDDGGGAFYGPKIDIKIEDALGRKWQCSTIQVDFNLPQRFDITYVDSNTEKRRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDAQLEYCNSVANKLKMYGIRVEVCHGERLPKLIRNAEKQKIPLMAVVGSKEVETETVTVRSRFGGELGTMSVDDFINRIKLASENPRSL | 651 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02798 | 651 | FunFam | Threonine--tRNA ligase | 546 | 650 | - | - | |
| Phco7g02798 | 651 | Gene3D | - | 547 | 650 | IPR036621 | - | |
| Phco7g02798 | 651 | SUPERFAMILY | Class II aaRS and biotin synthetases | 255 | 540 | IPR045864 | - | |
| Phco7g02798 | 651 | Hamap | Threonine--tRNA ligase [thrS]. | 78 | 647 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Phco7g02798 | 651 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 335 | 543 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Phco7g02798 | 651 | Gene3D | Bira Bifunctional Protein; Domain 2 | 237 | 546 | IPR045864 | - | |
| Phco7g02798 | 651 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 179 | 231 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Phco7g02798 | 651 | SUPERFAMILY | ThrRS/AlaRS common domain | 76 | 253 | IPR018163 | GO:0000166 | |
| Phco7g02798 | 651 | PRINTS | Threonyl-tRNA synthetase signature | 343 | 371 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Phco7g02798 | 651 | PRINTS | Threonyl-tRNA synthetase signature | 376 | 399 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Phco7g02798 | 651 | PRINTS | Threonyl-tRNA synthetase signature | 548 | 560 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Phco7g02798 | 651 | PRINTS | Threonyl-tRNA synthetase signature | 521 | 534 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Phco7g02798 | 651 | PRINTS | Threonyl-tRNA synthetase signature | 478 | 506 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Phco7g02798 | 651 | CDD | ThrRS_anticodon | 553 | 642 | IPR047246 | - | |
| Phco7g02798 | 651 | Gene3D | - | 141 | 197 | - | - | |
| Phco7g02798 | 651 | NCBIfam | threonine--tRNA ligase | 84 | 642 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Phco7g02798 | 651 | Pfam | Anticodon binding domain | 555 | 642 | IPR004154 | - | |
| Phco7g02798 | 651 | FunFam | Threonine--tRNA ligase | 141 | 197 | - | - | |
| Phco7g02798 | 651 | SUPERFAMILY | Class II aaRS ABD-related | 541 | 642 | - | - | |
| Phco7g02798 | 651 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 279 | 560 | IPR006195 | - | |
| Phco7g02798 | 651 | SMART | tRNA_SAD_4 | 179 | 231 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Phco7g02798 | 651 | CDD | ThrRS_core | 255 | 553 | IPR033728 | - | |
| Phco7g02798 | 651 | PANTHER | THREONINE-TRNA LIGASE | 65 | 646 | - | - | |
| Phco7g02798 | 651 | FunFam | Threonine--tRNA ligase | 237 | 546 | - | - | |
| Phco7g02798 | 651 | Gene3D | - | 82 | 235 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02798 | Phco-Chr7 | 47036851 | 47042073 | Dispersed |