Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02788 | ATGTTGTTCCACCCACCACCCTTGTCCCTCCAAACCTTGCTCAAGCGTGGCTTCACCCCCACTCCCAAACCCATCAACCGCTTCCTCCTTTTCCTCTTCCACCTCCAAAAGTTCAACCTAATAAGCCACTTCTTCTCCCAGCTGCAAACCAACAACGCCCCCACCAATCCCCGAACCCTCTCCCTCCTCGCATGGGCACTCCTCAAATCCCACAAATTCGAACAAGCAGAACAATTCATGCACACCCACTTGAAAATCACTCACCCCTTCATGTGGGACACCCTCATCCAAGGCCTCTGTACCCAACGCCTCGACCCTGAGAAAGCTCTCTCCGTTTTGCGGCGTTCTGTGAGGGACCGTGCCGTGGTACCTTCTTCTTTCACCTTTTGTTTGATAGTTCATGAATTGAGCTCGAAGGGGCTCATGGGTATGGCTCTTGAGGTGCTGGAGTTGATGGCTGAGGATGGAGTTAGGTGCCCTTTTGATGATTTTGTGTGTAGTTCCGTGATTTCTGGGTTTTGTAGGGTTGGAAAACCGGAACTTGGGGTGGATTTTTTTAAGAGTGTCACTGATTGTGGGGGGTTGAGGCCCAATGTGGTGACTTGCACGGCTCTTGTGGGGGCTCTTTGTAAGATGGGGAGGATTGGAGAAGTATGTGGTTTGGTGCAATGGATGGAGAAGGAAGGGTTGGGATTGGATGTTGTTTTGTACAGTGCTTGGGCTTGTGGGTATGTTGAGGAAAGGGTTTTAGTCGAGGTTTTAAGGAGGATGAGGGAAATGGAGGAGAAGGGTATAAGTCATGATAGTGTGAGTTATACTGTGCTTGTAGATGGGTTCTCCAAGCTAGGTGACGTGGAGAAGTCGTTTACTTTCTTGGCCAAGATGATAAAGGAAGGGCATAGACCTAATAAAGTCACATACAGTGCAGTCATGTCTGCTTATTGTAAGAAGGGTAAGGTGGAGGAAGCGTTTTCTGTTTTTGAGGGCATGAAAGAATTGGGAATTGAAATGGATGAATATGTGTTTGTGATTTTGATTGATGGGTTTGGAAGGAGAGGGGATTTCAATAAGGTGTTTAGTCTGTTTGATGAAATGGAGAGGAGCGGGATCAGTCCTAGTGTTGTTGCATACAATGTTGTTATGAATGGTTTATCCAAGCATGGGAGGACATTAGAGGCGGATGAGTTGTCGAAAAATGTTGCTGCAGATGTGATTACATACAGCACACTTTTGCATGGGTATACTGCAGAAGAAAACATTCCCGGGATTTTGCAGACAAAGAGCCGAATAGAAGAAGCTGGGATTACTATGGATGTTGTGATGTGTAATGTACTGATCAAAGCCCTGTTTATGATGGGGGCTTTTGAAGATGTTTATGCACTTTACAAAGGAATGTCTGAAATGGATCTGGTTCCGAATTCAGTGACTTACTGCACAATGATTGATGGCTATTGCAAGGTAGGTAGAATTGACGAGGCACTTGAGGTATTTGATGAATTTAGAAAGACTTCAATCCTGTCATCCGCGTGCTACAATAGTATTATTAATGGCCTCTGCAAGAATGGTATGGCAGAATTGGCCATCGATGCATTACTTGAACTCAATCACTCAGGTCTCGAGTTGAATATAGGCACATTTAGGATGTTAATGAAGACGATTTTTGCAGAAAACAATACAAAAGAGGCTTTAGATTTAGTTTACAGAATGGATGGTTTGGGACCAGACATATATAATGCAGTATGTAATGATTCTATCTTTTTATTATGTCAAAGAGGGTTACTTGATGATGCAAATCATATGTGCATGATGCTGAAAAAGAGAGGTCAACCTGTCACGGGCAAGTCTTATTATTCAATTTTGAGAGGGTATCTTTGTAATGGGAACAGGGAGAAAATTATGCCCCTTTTGAACAGCTTCCTGAAAGAATATGGTCTAGTTGAACCAATGGTACAAAGTATACTTGCATGCTACCTCTGTCTGAAAGATGTCAACAGTGCCCTTCAATATCTTGGAAAAACGGTGGATTACTCTTTAGCTGACATTTTTCCTGCTTCTATTCTCAAGATTCTCTTAAAGGAGGGTAGATCTTTAGATGCGTATAAGCTTGTTACAGAGACTCAAGATAATTTACCAGTCACATATGTTGATTATGCAATTGTTATTGATGGCTTGTGCAAGGGAGGATATCTCAATAAAGCATTGGATCTCTGTGCCTTTGTTGAAAGGAAGGGGATGAGTTTGAACATAGTCATATATAATTCAATCATAAATGGATTGTGCCATGAGGGATGTCTTATTGAGGCATTTCGGCTGTTGGATTCGTTAGAGAAACTTAATTTGGTACCCTCTGAAATAACTTACGCTACAGTAGTTTATGCACTATGTAGAGAGGGATTTTTGCTAGATGCAGAGCATATTTTCAGGAAAATGGTCCTCAAGGGCTTTCAGCCTAAAGTACAAGTTTACAATTCATTACTTGATGGCATTTCTAAGTTTGGACAATTAGAAAAGGCATTTGAGCTTCTTAATGATATGGAGACAAAATATATTGAGCCTGACTGTTTGACTATAAGTGCTGCAATTAATTGCTATTGCCAAAAGGGTGACATGCAAGGAGCCCTTGAATTCTATTATAAGTTCAAGAGGAAAGATGTAACACCTGATTTTTTTGGATTCTTATATTTGATAAGAGGTCTTTGTACCAAGGGAAGGATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAATCCAAGAATGTGGCAGAGTTGATGAACATAGTCAACAAGGAGGTTGATACTGAGTCAATAAGTGATTTCCTTGCCACTTTGTGTGAGCAAGGAAGGGTTCAAGAAGCTGTTACAGTTCTCAATGAAATTGCCTGTATACTTTTTCCTGTTCAAAGGTTGTCCACTTATAATCAAGGATTCCATAAACGACAAAAGATTTATGAATACAAGGATCTTGGTTCAAAATGCTCAAGCATTCTACCTTCCTCTTGCAAAAGTGGTTCGAATCTTGGATCTTGTGATGACAAAGATGTAAGTAATCTTACAACAAATAATGGTGATTGTATCACAAGATCCCAGATGCATGGTTTTGACTTCTATTATTCTAGAATTGCTGCACTTTGTGCCAAAGGGGAACTTCAGAAAGCAAATCAATCAGCGAAAGAAATGCTTTCTGATTTGACAGAGTCCATGAACTGA | 3210 | 0.4143 | MLFHPPPLSLQTLLKRGFTPTPKPINRFLLFLFHLQKFNLISHFFSQLQTNNAPTNPRTLSLLAWALLKSHKFEQAEQFMHTHLKITHPFMWDTLIQGLCTQRLDPEKALSVLRRSVRDRAVVPSSFTFCLIVHELSSKGLMGMALEVLELMAEDGVRCPFDDFVCSSVISGFCRVGKPELGVDFFKSVTDCGGLRPNVVTCTALVGALCKMGRIGEVCGLVQWMEKEGLGLDVVLYSAWACGYVEERVLVEVLRRMREMEEKGISHDSVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAVMSAYCKKGKVEEAFSVFEGMKELGIEMDEYVFVILIDGFGRRGDFNKVFSLFDEMERSGISPSVVAYNVVMNGLSKHGRTLEADELSKNVAADVITYSTLLHGYTAEENIPGILQTKSRIEEAGITMDVVMCNVLIKALFMMGAFEDVYALYKGMSEMDLVPNSVTYCTMIDGYCKVGRIDEALEVFDEFRKTSILSSACYNSIINGLCKNGMAELAIDALLELNHSGLELNIGTFRMLMKTIFAENNTKEALDLVYRMDGLGPDIYNAVCNDSIFLLCQRGLLDDANHMCMMLKKRGQPVTGKSYYSILRGYLCNGNREKIMPLLNSFLKEYGLVEPMVQSILACYLCLKDVNSALQYLGKTVDYSLADIFPASILKILLKEGRSLDAYKLVTETQDNLPVTYVDYAIVIDGLCKGGYLNKALDLCAFVERKGMSLNIVIYNSIINGLCHEGCLIEAFRLLDSLEKLNLVPSEITYATVVYALCREGFLLDAEHIFRKMVLKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDCLTISAAINCYCQKGDMQGALEFYYKFKRKDVTPDFFGFLYLIRGLCTKGRMEEARSVLREMLQSKNVAELMNIVNKEVDTESISDFLATLCEQGRVQEAVTVLNEIACILFPVQRLSTYNQGFHKRQKIYEYKDLGSKCSSILPSSCKSGSNLGSCDDKDVSNLTTNNGDCITRSQMHGFDFYYSRIAALCAKGELQKANQSAKEMLSDLTESMN | 1069 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 198 | 232 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat family | 748 | 796 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat family | 817 | 862 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat family | 302 | 349 | IPR002885 | - | |
| Phco7g02788 | 1069 | Gene3D | Tetratricopeptide repeat domain | 319 | 426 | IPR011990 | GO:0005515 | |
| Phco7g02788 | 1069 | Gene3D | Tetratricopeptide repeat domain | 797 | 985 | IPR011990 | GO:0005515 | |
| Phco7g02788 | 1069 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 686 | 791 | - | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 303 | 337 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 818 | 852 | IPR002885 | - | |
| Phco7g02788 | 1069 | Coils | Coil | 1047 | 1067 | - | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 888 | 922 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 748 | 782 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 440 | 473 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 895 | 919 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 305 | 339 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 785 | 817 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 475 | 505 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 510 | 542 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 821 | 854 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 270 | 303 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 165 | 198 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 856 | 888 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 341 | 374 | IPR002885 | - | |
| Phco7g02788 | 1069 | NCBIfam | pentatricopeptide repeat | 750 | 783 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 438 | 472 | IPR002885 | - | |
| Phco7g02788 | 1069 | Gene3D | Tetratricopeptide repeat domain | 557 | 662 | IPR011990 | GO:0005515 | |
| Phco7g02788 | 1069 | Gene3D | Tetratricopeptide repeat domain | 215 | 318 | IPR011990 | GO:0005515 | |
| Phco7g02788 | 1069 | Gene3D | Tetratricopeptide repeat domain | 466 | 556 | IPR011990 | GO:0005515 | |
| Phco7g02788 | 1069 | Gene3D | Tetratricopeptide repeat domain | 663 | 796 | IPR011990 | GO:0005515 | |
| Phco7g02788 | 1069 | Gene3D | Tetratricopeptide repeat domain | 74 | 214 | IPR011990 | GO:0005515 | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 338 | 372 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 783 | 817 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 853 | 887 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 884 | 915 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 469 | 499 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | Pentatricopeptide repeat domain | 398 | 448 | IPR002885 | - | |
| Phco7g02788 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 88 | 124 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 510 | 538 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 128 | 157 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 270 | 299 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 200 | 229 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 375 | 396 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 165 | 193 | IPR002885 | - | |
| Phco7g02788 | 1069 | Pfam | PPR repeat | 717 | 744 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02788 | Phco-Chr7 | 46941467 | 46944676 | Dispersed |