Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02776 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTACAAAATCATGTTACTCAAAGGAACAGATTAAGTCCAAGCTATTATCATCAAAATTAAAAACAAGTAGTGCAAAACACCGAAAAAAGGAACACAAAGAGAAGTCAAGAACTCATAAATACAGAGTTGGTACGAACAGATCAAAGAAAAGCGTTGCTGATTCTTCTATCAAGGCACCACTTGAGGACTCTTCAAATAAAAAAGTGATTATCCGAAAAACTCTCCATAAAACTGATGGGAACTCTTCACGAATGGTGTCTTCAACAAGGCTACAAGGAAGAAAAAATCCTCATACTTCTAGAAAAGAGGGGAATGGTGTTGATGAGGAAGCAAAAATTAAAAAACGTAAGAGGAGCAAAAAGAAGAATAGTCAAAGGGACAACATGGATCATGACGATGCTTCACGCCTTAAAAGGAGAACAAGATACCTCTTAATCAAAATGAAGTTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAAAAGCAGATTTTAAATTGTAAACTTAGTATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATAATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGGGATATTGCATTACTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAACCCAGAGAGGAAAGAAGACAGACACAGCATCAATACAGAAGGTGCTGATGAAAATTCATCCAATGATTCAACCAGTTCTTCGAGTTTGTGGTCTTTGAATGGAGAATGTCCTCCAGGAGATGAAGACCTTAGTCATGAATATTATTCTGTTAATAGCTTCATTGATTCTGATGAATCTGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTGTACGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACTCTGCATGAAAGTGAAAATAAATATCCCAATAATGAGAGCAATGATAGAACAAGAGAGGGTTCTTCAGGCTTACAAATGAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAACGAGCTTCCTCCTAGATCCGTTAAGGAAGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACCTGGCACTTAAAACCAGAAAGTATGAATCAGAAGAACAGCTTCAGAGTTCCACATCTCAGATATCAAAGGATTCTACATCTCCAAACATGCAGAAAAACGAATTTCTGAAATCAGAAGTCCCCAAAATTCCTGTGATGCATTCCCAGAAGGATGGTCAAAACATCACAGGACAAGAAAAAAATAAATTATGTAACAGTCTTTTGAAGAGAAGGAAGAAAAAACCATCTCCACCTCTGTCAAGAGAAAATAGCAACAAGGACTCTATGGAGATGAGTGATGATGTTAATTTGAAGAAACTTTTGAAAGAAAGGAAAAGAAGGGTAAATTTTACATATGAAGGAGACTCTGAGGTAGCAGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAGTGAAGTTCAATATTGCAGAGCTAAGGGATCAAATGAACCCTCTATCATATATGTTCCCACAGCCCAATTAAGGGAAAAGGTTGACAAATAA 2142 0.3838 MRDAENLNKKGSTKSCYSKEQIKSKLLSSKLKTSSAKHRKKEHKEKSRTHKYRVGTNRSKKSVADSSIKAPLEDSSNKKVIIRKTLHKTDGNSSRMVSSTRLQGRKNPHTSRKEGNGVDEEAKIKKRKRSKKKNSQRDNMDHDDASRLKRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILNCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEIIESTNAHLGTQFSLDSSWQDVFKEEAAMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDRHSINTEGADENSSNDSTSSSSLWSLNGECPPGDEDLSHEYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYPNNESNDRTREGSSGLQMRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRKYESEEQLQSSTSQISKDSTSPNMQKNEFLKSEVPKIPVMHSQKDGQNITGQEKNKLCNSLLKRRKKKPSPPLSRENSNKDSMEMSDDVNLKKLLKERKRRVNFTYEGDSEVAELEFERLSKVKSKVDSMKQKLSEVQYCRAKGSNEPSIIYVPTAQLREKVDK 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02776 713 MobiDBLite consensus disorder prediction 549 637 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 592 606 - -
Phco7g02776 713 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Phco7g02776 713 SUPERFAMILY Homeodomain-like 491 556 IPR009057 -
Phco7g02776 713 MobiDBLite consensus disorder prediction 360 379 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 10 31 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 32 57 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 429 460 - -
Phco7g02776 713 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Phco7g02776 713 MobiDBLite consensus disorder prediction 59 73 - -
Phco7g02776 713 Pfam PHD-finger 235 290 IPR019787 -
Phco7g02776 713 MobiDBLite consensus disorder prediction 91 105 - -
Phco7g02776 713 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Phco7g02776 713 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 12 711 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 1 146 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 107 125 - -
Phco7g02776 713 SMART HOX_1 490 552 IPR001356 GO:0003677
Phco7g02776 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Phco7g02776 713 MobiDBLite consensus disorder prediction 429 489 - -
Phco7g02776 713 CDD homeodomain 496 543 IPR001356 GO:0003677
Phco7g02776 713 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Phco7g02776 713 Gene3D - 490 558 - -
Phco7g02776 713 FunFam pathogenesis-related homeodomain protein 490 554 - -
Phco7g02776 713 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 555 577 - -
Phco7g02776 713 SMART PHD_3 235 288 IPR001965 -
Phco7g02776 713 CDD PHD_PRHA_like 235 287 IPR045876 -
Phco7g02776 713 MobiDBLite consensus disorder prediction 329 389 - -
Phco7g02776 713 MobiDBLite consensus disorder prediction 76 90 - -
Phco7g02776 713 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02776 Phco-Chr7 46845660 46850331 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Phco7g02776 Homeodomain 7.6e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02776 7 46845660 46850331 Phco7g02776 7 46845660 46850331 ECH
Phco8g01837 8 19314443 19319960 Phco7g02776 7 46845660 46850331 PCT