Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02747 ATGGAAGATGATGAGCCATGCATCACCAGTCTTAGCCTTGGACTAGGAATGGGAGGCCATGTGCCAAGGAAGGAGAAGGAGAAGCAGAAGCAGAAGCTCCCTTCCTTAGACCTAACGTTTGAGATTTGTCCAAGGGGAGAGCAAATGATTCACGTGGATCAACAACAACAACAGCAACTTCATGATGATAAGGCAAAAGGGTTGTTATGTTTGAAACACCCCAATGAAAATAACAGCCCTGAGAGCAGCAACAACAGCAATAACGGCACCAGAAAGAAACTGAAGCTTACAAAGGAGCAAGCAGCCACCCTTGAGGATATTTTCAAGCTGCATACCACTCTTAACCCCGCACAGAAGCAGGCACTTGCTGAGAAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGGGCAAGAACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGCTGTGAGAAACTAACCGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTCTCCAAGGCCACAACTTTGAGCATTTGTTCATCGTGTGAGAAAGAATTGAAGCCTAATGAAGGGAAGAAAGGGGGCATTACCGATGTGGTCCAAAACAGCAGCCACAAATTGCAGAACAGTGTAGGTGTAAAGGGCATTTAG 714 0.4482 MEDDEPCITSLSLGLGMGGHVPRKEKEKQKQKLPSLDLTFEICPRGEQMIHVDQQQQQQLHDDKAKGLLCLKHPNENNSPESSNNSNNGTRKKLKLTKEQAATLEDIFKLHTTLNPAQKQALAEKLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPKPLYIQLSKATTLSICSSCEKELKPNEGKKGGITDVVQNSSHKLQNSVGVKGI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02747 237 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Phco7g02747 237 MobiDBLite consensus disorder prediction 70 94 - -
Phco7g02747 237 SUPERFAMILY Homeodomain-like 76 148 IPR009057 -
Phco7g02747 237 Gene3D - 69 146 - -
Phco7g02747 237 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Phco7g02747 237 Pfam Homeodomain 91 145 IPR001356 GO:0003677
Phco7g02747 237 SMART HOX_1 89 151 IPR001356 GO:0003677
Phco7g02747 237 Coils Coil 146 180 - -
Phco7g02747 237 MobiDBLite consensus disorder prediction 75 91 - -
Phco7g02747 237 Pfam Homeobox associated leucine zipper 147 180 IPR003106 GO:0006355|GO:0043565
Phco7g02747 237 MobiDBLite consensus disorder prediction 1 33 - -
Phco7g02747 237 CDD homeodomain 91 148 IPR001356 GO:0003677
Phco7g02747 237 SMART halz 147 190 IPR003106 GO:0006355|GO:0043565
Phco7g02747 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02747 Phco-Chr7 46503895 46505060 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco7g02747 Homeodomain 2.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01871 8 19758672 19759783 Phco7g02747 7 46503895 46505060 PCT