Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02743 ATGATACCAACTTATCGTTATTCAGTGTCTTCTCCTATGCCTATAGATCTTAATGAAGATCATACACACAAGCTCTTCAGTACAAACCATCAAGCCTCTTCTTTATCTACTTCTATTCTCTTCAACCCAGATCAAGATCAAGGAGGATTTTGCTATTGGGAATCAAAACACTTTCAAAGTGACGAAGAGGCCCAGAAGATTGTTCCTTCCAGTGGATCATGGGATCATCCAGTAGAAAAGATTGAAAACAGAAGTGATCTGAAGCTGAGAGTTTGGAAGAAAGAAGAAGGCTGTGACGATTTTAAAGGTGAAGATAGTTCAACAACGATGACTTCAAAAATGAGAATGGTGCGGAAAATGATGGTTTCAGATGAAACAGATTCTGATATAGCAGACATCTCTAACTCTAAGCAGATCAAGTATAAAGAGAAAAACCCAGAACTGTCACCACTAGTCACTGATGATAGTAACTATAATTCTCCTTCAAACCAGAACAGTGTCACTGTTAGGGTTTGTGTTGATTGCCACACTACTAAGACCCCTCTCTGGAGGAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGAAAGGCGAGCCATTGCTGCGGCTACAACTACAGCAAATGGAACCAATAGGTTGAAGGCTGAGAAATCTGAAATGAAGAAGGGGAACAAGTTGCATAACAAAGAGAAAAAGTCCAAAACTGAGGGTGCACCAGTGCTGTTGAAAAAGAAGCGTAAACCTGCCAAGAATAGAAAGAGGTTTGGTGCTTTGGAGGATTTGACAGTAAGATTGAGTAACAGCTTGGCTGTTCAACAAGTTTTCCCTCAGGATGAAAAAGAGGCTGCAATCTTGCTCATGGCTTTATCTCATGGACTACTTCATGGCTTCCCCTCAGATCTTTATATCACTTAG 939 0.4079 MIPTYRYSVSSPMPIDLNEDHTHKLFSTNHQASSLSTSILFNPDQDQGGFCYWESKHFQSDEEAQKIVPSSGSWDHPVEKIENRSDLKLRVWKKEEGCDDFKGEDSSTTMTSKMRMVRKMMVSDETDSDIADISNSKQIKYKEKNPELSPLVTDDSNYNSPSNQNSVTVRVCVDCHTTKTPLWRSGPKGPKSLCNACGIRQRKERRAIAAATTTANGTNRLKAEKSEMKKGNKLHNKEKKSKTEGAPVLLKKKRKPAKNRKRFGALEDLTVRLSNSLAVQQVFPQDEKEAAILLMALSHGLLHGFPSDLYIT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02743 312 SMART GATA_3 166 217 IPR000679 GO:0006355|GO:0043565
Phco7g02743 312 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 304 - -
Phco7g02743 312 MobiDBLite consensus disorder prediction 142 163 - -
Phco7g02743 312 Gene3D - 170 208 IPR013088 GO:0006355|GO:0008270
Phco7g02743 312 ProSiteProfiles GATA-type zinc finger domain profile. 166 202 IPR000679 GO:0006355|GO:0043565
Phco7g02743 312 Pfam GATA zinc finger 172 206 IPR000679 GO:0006355|GO:0043565
Phco7g02743 312 MobiDBLite consensus disorder prediction 225 246 - -
Phco7g02743 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 206 - -
Phco7g02743 312 CDD ZnF_GATA 171 203 IPR000679 GO:0006355|GO:0043565
Phco7g02743 312 ProSitePatterns GATA-type zinc finger domain. 172 197 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02743 Phco-Chr7 46458888 46460261 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco7g02743 GATA 2.5e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01882 8 19831904 19833178 Phco7g02743 7 46458888 46460261 PCT