Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02729 ATGGAAAATCTCTTCTCTCTTCCTGTAGCCGCCAGGGCTGATATTATCCAATTTCTGGTGCAGTCTTTTGGCTGCAGTTACATTTGTCTATGGGCATATGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACGACCAACCAGGCTCTAGTTTGGGGACTGTGGCACAACAACTTTTCAGTCAGTTCCGGACTCTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCATTTAGGAACCAGCGTCCCTACCTAGAGCTGCAACGATTGGAACTTCTAAGACTTGCATCAACAGAAATACAAACACAATTCTTTCAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTATTTCCTGGAGATTTTTCTGGTGGACAGTCCCAGAAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGGTCAATATCCACTGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCACTTCTCAATCCCACTTTCCTGAGACACTTGGAGGAGCAACAATGTCCCCAATGCAGCCGGTGCCAAACACAGCCATTCAAGCATTGGCACAAGCTCCTCTAACAACAGAAAGTGAACATGATGCAATCATGAGAGCAATCCTCCATGTTATATCTCCAACTTCTCATCAGCACCAAAACTTGCCTTTTGCTCCAGTGGTCCATCCAGACACCAGTGCTTTCCAGAGTTACAGATCAGACATTGGTCCCAACATGGCTCCCAATATCAGAAGGCAAAGCTTCATGAAGAGATCTTTTGCATTCTTTAGAAACTTAAATTTTATGAGAATGAGAGAACGCATTCAAGCAACGTCCCGTCCCACAAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCACTACTCCCTCCAGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTCTCTAATGGCTGAAGTTGATCAACTAAGCAAAAGGAATCAGGGATTGACATCACTTTTGCCATCCAAAGAACCTACAACTGAAGAAACCAAGGCTAGATTATCTCCAAATGAAAGATTAGGTGTCCGAGTTTCACATGTACCCGAATCAAGCTCGTCACAGGATCGAATGGTGGACTTGCAAGTGAATGTGAGAGGACAAGTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCTTAAAACGGTGTCTCAACGTGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAAGGGAATAATGTTCTTCATCAACTAACCTTCAGATTAAGGATTATTCAGCCATTCCATCGGTTGTTCCTGAATTTGAATGACTATACCTTCCCATCTGCTGCTACTGTTATTCGTACTCTTGTCTCCTCCCTTCACAGCTTGTGCGTGGGATTCATGTTGTTACTTCTTTCTCCATATTGCTCTTTTGGTGTGAAGAATAATGAGGTTTTGATGTTTATGCAGGGAAGTGAATGGGACGAGTGTGCCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGATTTGGCACAGTACCAAGAGGACCAATAG 1683 0.4272 MENLFSLPVAARADIIQFLVQSFGCSYICLWAYDSISPNRLCFLDGIYNVRNDQPGSSLGTVAQQLFSQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGDFSGGQSQKIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGATMSPMQPVPNTAIQALAQAPLTTESEHDAIMRAILHVISPTSHQHQNLPFAPVVHPDTSAFQSYRSDIGPNMAPNIRRQSFMKRSFAFFRNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSSLMAEVDQLSKRNQGLTSLLPSKEPTTEETKARLSPNERLGVRVSHVPESSSSQDRMVDLQVNVRGQVSQIDLSICLLEFLKRCLNVSLVSMDANTHIAEGNNVLHQLTFRLRIIQPFHRLFLNLNDYTFPSAATVIRTLVSSLHSLCVGFMLLLLSPYCSFGVKNNEVLMFMQGSEWDECAFEEAVRRVVADLAQYQEDQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02729 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 376 IPR036638 GO:0046983
Phco7g02729 560 SMART finulus 318 367 IPR011598 GO:0046983
Phco7g02729 560 Coils Coil 318 338 - -
Phco7g02729 560 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 105 551 IPR044658 -
Phco7g02729 560 MobiDBLite consensus disorder prediction 153 176 - -
Phco7g02729 560 Coils Coil 351 378 - -
Phco7g02729 560 CDD bHLH_AtbHLH_like 317 369 IPR045239 -
Phco7g02729 560 Gene3D - 311 384 IPR036638 GO:0046983
Phco7g02729 560 Pfam Helix-loop-helix DNA-binding domain 316 361 IPR011598 GO:0046983
Phco7g02729 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02729 Phco-Chr7 46247427 46251880 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g02729 HLH 7.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02729 7 46247427 46251880 Phco7g02729 7 46247427 46251880 ECH
Phco8g01895 8 20017477 20022184 Phco7g02729 7 46247427 46251880 PCT