Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02658 ATGAAGGCTCCTCCAAATGGCTACTTGCCTAATTCCAGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCCTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCGTTCCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGTATGCTTCACAATGTTGCCCTTCACGCTGATCCTGAAACTGATGAGGTCTATGCGCAGATGACCCTTCAACCTGTTACTAAATATGACAAGGAAGCAATATTGGCATCTGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCCCGTAGAGCAGCTGAGAAAATATTCCCCCTTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAGTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGACTTTTTGCTGGAGATTCAGTTCTTTTTATCAGGGATGAAAAACAACAACTTCTTCTAGGTATAAAGAGAGCTAACCGACAGCAACCAGCGCTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCCCTCTACAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGGGTACGCAGACATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAGAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCAAAGTTCCCTAAGCAGCCAGGAATGCCAGATGATGATTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGGATGAAGGATGCCTCAAGTTCAATCTTCCCAGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCCGCTGTCCAATCTGGATTTATGCCCCCATCCATGCTTTCATCCAATGCACTGCATGGTAACCTTCCCACTGATGATCCATCCAAATTATTGAACTTTCAATCTCCTGTCCTCTCTTCACCAAATCTACAATTTAACAAACCTAACTTACCAAACCAAGTCAACCAATTGCAACAACCCCCAACATCATGGCCTCCGCAGCAGCAACAGCAGAAGCTGCAGTCATTGATGCCAACACCCTTAAACCCGCTCCAACAGCAGCAACAGAGGCAACAACAGCTTCCTGTACTGCAAAACCTGTCACAACCACAGCAACAACAGCCCCAAATGCCCCAACAGAGAGCACAACAGCCACAACAGCAGCAGTCATGTCAACAGACCATCATGAATAATGGGGCAGTTTCTTCCAACCAGATTCCAAATCAGTGTGTGCAGCAACCAGTGACATACTCCCAGCTTCAGCAACAGCAATTACTCTCAGGAAATATCCCACCCCAACAAAGTTTTCAATCACCCAATAAGAATACATTGCTGATGACATCCTTACCGCAAGACTCTCAGTTTCAACAACAAATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAGCAGACACAGTTGCAGTCATCTCCATTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGCACCACAGCAACCACAAATGACACAAATGTCACAGCAAAACAGCTCAGAGCAACAACCACAGTTGCAGTTGCTCCAGAAATTGCAGCAGCAACAACAACAACAACAACAACAGCAACAACAACAACTCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATTACCGCAGCTGCCTCTATCACAGTGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTTTCAATGGCAACAACTACTCTTCTTCGTCTCTGATGCAAACACAGCAGCTTCCTGTGAACCAATCCCATAATACACAGAAATCATTAACTAATACTAGAGCTCCTTCAACTCTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCATCTACGAATAACTGCCAGATATCTCCTTCAAATCTGATAAAAAGAAATCAACAGGTACCAACCACATTAGGAGGACCTTCGGTAGTTGAACCTACCAATCATTTGATACAGGAGCTTCATAGAAAGTCTGAGATGCAGATCAAACACGAATTACCCAGTGTAAGAGGACCTGACCAGCTGAAGTGCAAGGGGACAATTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTCTATTGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAGTTTCTGCATGGACGGTGATGTCCAATCACACCCAAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTATCAAGAGGGTATGATTCTCAAAAGGATCTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACCGAGCTGTCCACTGCTGCCATTACTTCGCAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCCAGTGATATTGCCATCAATGATCCTGGGGTTTTAAATAATGGCTTGTGGGCTAGTCAGACTCAAAGAATGAGGACATATACCAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGATCTCCGGCATGATTTGGCTAGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACAGAGTGGAAACTAGTCTACGTAGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCGGAGGTACAGCAAATGAGCTTGGATGGAGATTTAGGCCATGTTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGAAATGCATGGAGGGGACAGTACGATGATAACTCTGCAGCCTCGTTTAATCGATAA 3354 0.4431 MKAPPNGYLPNSSEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPLLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDDSDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAVQSGFMPPSMLSSNALHGNLPTDDPSKLLNFQSPVLSSPNLQFNKPNLPNQVNQLQQPPTSWPPQQQQQKLQSLMPTPLNPLQQQQQRQQQLPVLQNLSQPQQQQPQMPQQRAQQPQQQQSCQQTIMNNGAVSSNQIPNQCVQQPVTYSQLQQQQLLSGNIPPQQSFQSPNKNTLLMTSLPQDSQFQQQIDQQASLLQRQQQQTQLQSSPLQLLQQSLSQRAPQQPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLFNGNNYSSSSLMQTQQLPVNQSHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPSNLIKRNQQVPTTLGGPSVVEPTNHLIQELHRKSEMQIKHELPSVRGPDQLKCKGTIADQMEASSGTSYSIDPNNIHQNFPLPSFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAITSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWASQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDDLRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02658 1117 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Phco7g02658 1117 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Phco7g02658 1117 FunFam Auxin response factor 289 361 - -
Phco7g02658 1117 MobiDBLite consensus disorder prediction 647 675 - -
Phco7g02658 1117 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco7g02658 1117 Gene3D - 985 1079 - -
Phco7g02658 1117 Gene3D - 123 227 IPR015300 -
Phco7g02658 1117 MobiDBLite consensus disorder prediction 445 501 - -
Phco7g02658 1117 FunFam Auxin response factor 124 228 - -
Phco7g02658 1117 MobiDBLite consensus disorder prediction 761 801 - -
Phco7g02658 1117 Gene3D - 289 360 - -
Phco7g02658 1117 FunFam Auxin response factor 985 1079 - -
Phco7g02658 1117 Coils Coil 672 693 - -
Phco7g02658 1117 CDD B3_DNA 125 217 IPR003340 GO:0003677
Phco7g02658 1117 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 1079 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco7g02658 1117 SMART B3_2 126 228 IPR003340 GO:0003677
Phco7g02658 1117 MobiDBLite consensus disorder prediction 527 552 - -
Phco7g02658 1117 Pfam AUX/IAA family 988 1076 IPR033389 -
Phco7g02658 1117 SUPERFAMILY CAD & PB1 domains 1004 1068 - -
Phco7g02658 1117 MobiDBLite consensus disorder prediction 1095 1117 - -
Phco7g02658 1117 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Phco7g02658 1117 ProSiteProfiles PB1 domain profile. 990 1083 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02658 Phco-Chr7 45527987 45534641 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco7g02658 AUX_IAA 5e-09 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02658 7 45527987 45534641 Phco7g02658 7 45527987 45534641 ECH
Phco8g01972 8 20948389 20954873 Phco7g02658 7 45527987 45534641 PCT