Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02641 ATGATGTTCCATTCTCAGGGTGTGTCAAGACATTGTAGTCTCCTTGCTGTCCTGAGTGGTAAATTACGTGACACCAAACAAAAGCAGAAGCAGAGTGCTGCTTCTGAGGATCAACCTCCTTATCCCTTTCCAGAGCTTTCTTCCTCTGGCAGTCTTGAGGTTAAGTTATTGATCAAACCTAATACCGATGAACTCGGTCGAGCTCTTGAACAACTACAGCCAGATTTTGTTTACCTTCAAGGTCAGCTACTGGAAGATAGGGGAGAAATTGGGTCCCTTGTATGGGAGGATTTTGACCTGTCTGCCCCAGAAGCATTGTGTGGATTATTTGGTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAGGGAGAGAAATTGGCGGAGGCACTCCGTAATAAGGGAGTTCCATACACTATCTATTGGAAAAATGATTTTTCAACGTATGCAGCTTCACATTTTCGTCATTCTTTTTTCTCGGTAGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTGGCATCTTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAACAGCCAGAAAGGTGCTGGTAAGCTTGGGCCTCAAATTCTTGGGATTCCTCCCAGCATTGATACTAGTCCTTGTGTAGCAAACATGAAGGAAGAGGAAGAGGAAAGTTCACCTGAGACTATTTCTGCTGTAAAGATATATGATGAAGATGTGAACATGAGATTTCTTGTTTGTGGAGTTCCTTGCACATTGGATGTTTGCTTGTTGGGGTCATTAGAGGATGGACTCAATGCTCTTCTGTTTACAGAAATACGAGGATGCAAACTTCACAACAGGACTAGTGCTCCACCACCACCTCTGCAGGCAGGAACATTCTCACGTGGTGTGGTGACTATGCGTTGTGATATATCCACATGTAGTACTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAGCTCATTGAGAAGAGTCAACTTGTTCAGGCATTTCCTAATCCTGAACAAAGTAAATCACCTTCCCTAGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGACTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCATCCAATCTGTCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGCATTCAGGGATTGCCAGTTGCATCTTTTAGTAAAGATGATGCTGAGCGCCTCCTTTTCTTCTGTACTAGGCAAGAGAAAGAAAACTGTCGTAACAAACAAGTTTTCTCTGCAATTCCAAGTTGGCTGAAACCTCCACCGCCCAGTCGAAAAAGATCTGAACCATGCTCTAGTTCAAAGTCTATCAATCCTGGTGGCCGGGGAATTGAAGATGTTGGTGGTCATAGACAGAAATTAAATCTTGCTGCTATGAGGCCAATCCCTCAATCTCATAGACACAAGATTCTCCCCTTTTCTGGATTGTCTGGGGGTGCAAGATATGACGGAGACCATGGAAAATCAAATCAGCCGCTTGCTCCTAATAAGCATAATGTTTCAGGCCCTACTTCAGTTACAAATAGGAAATCTGTGTCGAACTCATTTCAAGCTAACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGTGTTTGCTCAGAGGAGGAATTCCTAAGGGATGTAATGCAGTTTTTGATCCTTCGGGGGCATAATCGTCTAATTCCGCCAGGTGGACTTGCAGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTCGACCTGTTCAACTTGTACAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGTATCAATTGGAAAGGGCAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACTGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTCTTAGAATATGAATTAGCTCACGATGACGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGTGGTGTATGTGGTGAGTGGGCTCATTTTGGCTGTGATCGGCGGCAGGGACTTGGAGCATTTAAGGACTACGCCAAAACCGATGGATTGGAGTACGTGTGTCCTCGGTGCAGTGCCTTAAAGTTCAGTAAAAAATCCCAAAAAACTGCAAATGGTTATTAA 2262 0.4346 MMFHSQGVSRHCSLLAVLSGKLRDTKQKQKQSAASEDQPPYPFPELSSSGSLEVKLLIKPNTDELGRALEQLQPDFVYLQGQLLEDRGEIGSLVWEDFDLSAPEALCGLFGSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNDFSTYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSQKGAGKLGPQILGIPPSIDTSPCVANMKEEEEESSPETISAVKIYDEDVNMRFLVCGVPCTLDVCLLGSLEDGLNALLFTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSTAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAFPNPEQSKSPSLEPRRSASVACGSSVFEVCMRLPAWASQVLRQLASNLSYRSLVMLGIASIQGLPVASFSKDDAERLLFFCTRQEKENCRNKQVFSAIPSWLKPPPPSRKRSEPCSSSKSINPGGRGIEDVGGHRQKLNLAAMRPIPQSHRHKILPFSGLSGGARYDGDHGKSNQPLAPNKHNVSGPTSVTNRKSVSNSFQANQIISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02641 753 SUPERFAMILY ARID-like 577 691 IPR036431 GO:0003677
Phco7g02641 753 MobiDBLite consensus disorder prediction 527 545 - -
Phco7g02641 753 MobiDBLite consensus disorder prediction 26 47 - -
Phco7g02641 753 SMART ARID_2 573 676 - -
Phco7g02641 753 Pfam ARID/BRIGHT DNA binding domain 579 676 IPR001606 GO:0003677
Phco7g02641 753 ProSiteProfiles ARID domain profile. 576 680 IPR001606 GO:0003677
Phco7g02641 753 MobiDBLite consensus disorder prediction 516 545 - -
Phco7g02641 753 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 753 IPR042293 -
Phco7g02641 753 MobiDBLite consensus disorder prediction 451 483 - -
Phco7g02641 753 Gene3D - 574 679 IPR036431 GO:0003677
Phco7g02641 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 743 IPR013083 -
Phco7g02641 753 CDD PHD_ARID4_like 686 737 - -
Phco7g02641 753 CDD ARID 578 676 - -
Phco7g02641 753 SUPERFAMILY FYVE/PHD zinc finger 679 742 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02641 Phco-Chr7 45313643 45320071 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco7g02641 ARID 1.3e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02641 7 45313643 45320071 Phco7g02641 7 45313643 45320071 ECH