Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02610 ATGGAAGAAAAATCTTCCTTAAAAGGTTTGCTGAAAGATGAAGAAAGGCCTCATGACTGTAATACAACAAGGAACCGAACCGATGAACCCTCCCTTCATAACACTATGGGATCCACTCTTCTCTGCTTGAGCCTGAATAACTCTGGACAGCCCTTTAACCAAATGGGCATGCTGAGAAGCAAGCTTGAGGAAGCGAAGAAAGAGAATGAAACCTTAAAGGCCATGCTCATTCAGGTCAATGAACACTGCACTTTTCTTCAGAATCGCATACTTTTTGAGATGCAGCAGCATCAACTCTCTTCATCACCTTGCAATAATAACAATAATCATGACTCGCAGGGAGAAATGCAAGATGTGGAGAAACCAATGCTACACACTCGGCAGTTTTTGAATATTGGTGACTGTTCTTCATCACTTTCAGAGGGTTACACAGAAAACTTTGTAAAGAAAATATTAGGCAGAAGCCTGGCATGTGGCAAAAACAATGTTGAAGGTGAAATGAACAAAAAAATAGCATTGGATGAAGCAAAATGCACAGAAGATCAAGCATCTGAGGTTACTTGCAGAAGAGCTAAAGTATCCATCAGAGCACGATCAGATTTTTCTATGATGGGAGATGGGTGTCAATGGAGAAAGTATGGACAAAAGACTGCAAAAGGAAACCCTTGTCCGCGAGCCTACTACCGTTGCAGCATGGGAACTGCATGTCCAGTTCGTAAACAGGTGCAGAGGTGTTTTAAGGATGAGAGTGTTCTCATCACAACCTATGAAGGGAGCCATAACCATCCACTCCCACCAGCAGCCAGAGCTTTGGCAAGCTCAACATCAGCAGCACTGAACATGTTCCTTTGTGGCTCAATCACTAGTTCAGTTGCCACCACAACTCCACCAAACTCACCCCTCTTCTCTTCATCACTATCTTCTATTTCCCCAACTGCACTAGCTACTTTCTCCCACAATGCAACTTGTCCCACAGTAACACTGGACTTGACCCACCCCAACAACAATAACTATCTTCAGTTCCAAAGGGCCACCACTTCACAATACCACACACACCCTTTGTTCCCTCTCCCACTACATGGTCACTCCCCAACCTTGTTAACCCCAGAGAAAAACCTTGCATTGGTGGATGTTGTCAGTGAGGCTATAACCAAAGACCCTTCTCTCAAGGCAGCACTTTTTTCAGCCATTTCCTCACTCACTGGAGATCCTCAGAAGAATTGCAATAACCACAGCCAACATAGTAAGAGTAGCAGTGGTTATGATCCTTGTTCTAAGATGCCTGCAATACCACCTCATCAGCCTTACACTACTGAGTTGACATAG 1326 0.4412 MEEKSSLKGLLKDEERPHDCNTTRNRTDEPSLHNTMGSTLLCLSLNNSGQPFNQMGMLRSKLEEAKKENETLKAMLIQVNEHCTFLQNRILFEMQQHQLSSSPCNNNNNHDSQGEMQDVEKPMLHTRQFLNIGDCSSSLSEGYTENFVKKILGRSLACGKNNVEGEMNKKIALDEAKCTEDQASEVTCRRAKVSIRARSDFSMMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDESVLITTYEGSHNHPLPPAARALASSTSAALNMFLCGSITSSVATTTPPNSPLFSSSLSSISPTALATFSHNATCPTVTLDLTHPNNNNYLQFQRATTSQYHTHPLFPLPLHGHSPTLLTPEKNLALVDVVSEAITKDPSLKAALFSAISSLTGDPQKNCNNHSQHSKSSSGYDPCSKMPAIPPHQPYTTELT 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02610 441 Gene3D WRKY domain 188 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco7g02610 441 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g02610 441 MobiDBLite consensus disorder prediction 1 26 - -
Phco7g02610 441 MobiDBLite consensus disorder prediction 1 33 - -
Phco7g02610 441 MobiDBLite consensus disorder prediction 403 422 - -
Phco7g02610 441 SMART WRKY_cls 204 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g02610 441 FunFam probable WRKY transcription factor 31 189 266 - -
Phco7g02610 441 Coils Coil 55 82 - -
Phco7g02610 441 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 54 414 IPR044810 GO:0003700
Phco7g02610 441 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g02610 441 SUPERFAMILY WRKY DNA-binding domain 197 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco7g02610 441 MobiDBLite consensus disorder prediction 403 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02610 Phco-Chr7 45038826 45042188 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco7g02610 WRKY 7.9e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02610 7 45038826 45042188 Phco8g02032 8 21709770 21713696 PCT