Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02596 ATGGAGGCTCAATTAGAGGGTAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCCACTGAATTCAGTGCCATCAGATTGTAGGAGTCGCCAGCTGTTTCCTGCTGATCCTGAAATTCTTGCAAGTGGTGAGGCTTCTAACAATTTGTCTTCTGCTCATGATGATGTTAACCTTGCGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTATTGCTGATGAAGGAGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGTCCAAGTATACCCTATCATAGAAGGGGAAGAAAAAAGTGGAAAGAAGACAAAGATTACTGGGAGTACTTTGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGTCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTTGCAGGCCACAATAAGAGAAGGAGGAAAACGCATCCTGATGCTAGTGTAGTTAATGACGGCTCTGTAAATGAAGAAAAGGGCAGTAGATATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGCTCAGGTAATATGACAAGCCAGGATGTTCTATCTCATCTGCTGAGGAACCTGGCAAGTGTGGCTGGTACAATTAATGGGAGAAATATAGTGTCTTTATGGGAGGGATCTCAAGATTTGGTTAAAGCTGGAACATCTGGAACTGCACAGAATGTTCCTAACACAAATTTTAGTGGTCCTGAAACGTCCAGACCTTTTGATACTTCTACCAAGATGGATAATGGTCTAATCAGTCAGGACCCTCCAGAGTCTATGGTACAATGTGAGATGACTCCTGCTAATGGTATAACTAAAAGATTTATAGCTTCGGGCAGTGATGGAGTAGGAAGTTCAAAATATCCTTCATTACCACAGCCATCAAATGTACTTCTGTCACGGGATAGTCTTCCACCCCATTCAGTCTCAGCAGAGCCTACGGTTGGAAGAATTGGATTAAGTAATATTGACCTGAATAGTGCATACGATGATGTACAGGATTATGTTGAGAACACAAGAAATTCTCGTCCTCCTTTGCCTTCAGGGAACGGGTCTCTTGATCATCCTTTATGGGTTCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCATAGTCCCACTGAGATAGAGAGCTATATAAGGCCTGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAACTTGCTATGCTGAATGATTCTTTTTGGAGAACAGGATGGATATATACAAGAGTGCAGCACTCGGTAGCTTTTCTGTATAATGGTCAGGTGGTCATAGATGTACCATTGCGATTCAAAAGTCCACAGAATTGTCAGATTTTTTGTGTTAAACCACTTGCTGTTTCTGCAAGTTCTTGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTGCTGTCCAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAAGATAGTTGTTATGATTTGGTTGATGCTGATGCTGCCATTGGACATCATGAGCTTCAGCATCTGAGCTTCTCTTGTTGTATACCGAATGTGGCTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGGCAGCTGAGACTGCTGATGACATCCAAATAAAAACTAAACGAATGGAAGAAAAGGCTCAATCATTGTATTTCGTACAGGAAATGGGTTGGCTCCTTCACAGAAACAGTGTGAAAGTTAGGCTAGGTCCTGTGGCACCTGTACAAGATTGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGATCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGGCTCTGTTGATATAGGAGAGCATACCTCAGTTGAGTTAGCATTGTTAGAGATGGATCTTCTGCACAAAGCGGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAATGCTTCAGATGGTGGAGACAGTAAAGAGCAGCAAGTCAACAAGTCCCTTAACAGATTCATATTCAGACCTGATTCAGTTGGGCCAGCTGGGTTGACTCCCCTTCATGTTGCAGCTAGTATGCATGGTTCGGATAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGAATTGAGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCTTATGACCATGCATCCCTGCGAGGCCACTACTCCTACATTCAACTTGTCCAGAGGAAAATAAGCAGTACATGCAAAAGTGAACATGTGCTTAATATCCCTGGCACTCTTGTAGATAGTAACATAAAGCAGAAGCAATCAGATGGACATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAAGATCAGCAATGCTGCGACGTTGTGGGCTATGCCAGCACAAGTTGGCGTATGGTGGTGTGAGAACTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCTGTGTGTGTCTGCGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTCTATTATGTATTCCAGCCATTCAGTTGGGAATCATTGGAATATGGGTCTATGTAA 3096 0.4289 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTATPLNSVPSDCRSRQLFPADPEILASGEASNNLSSAHDDVNLAEGRRELEKRRRGIADEGGVEMNDGAGSLNLNLGVQVYPIIEGEEKSGKKTKITGSTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSVNEEKGSRYLLMSLLRILSNMHSNGSGNMTSQDVLSHLLRNLASVAGTINGRNIVSLWEGSQDLVKAGTSGTAQNVPNTNFSGPETSRPFDTSTKMDNGLISQDPPESMVQCEMTPANGITKRFIASGSDGVGSSKYPSLPQPSNVLLSRDSLPPHSVSAEPTVGRIGLSNIDLNSAYDDVQDYVENTRNSRPPLPSGNGSLDHPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTVYLRLENSAWEELCYNLGSSLRKLAMLNDSFWRTGWIYTRVQHSVAFLYNGQVVIDVPLRFKSPQNCQIFCVKPLAVSASSCVQFIVKGFNLLLSNTRLLCALEGKYLVQDSCYDLVDADAAIGHHELQHLSFSCCIPNVAGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQIKTKRMEEKAQSLYFVQEMGWLLHRNSVKVRLGPVAPVQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEGSVDIGEHTSVELALLEMDLLHKAVKRNCRPMVELLLKFVPVNASDGGDSKEQQVNKSLNRFIFRPDSVGPAGLTPLHVAASMHGSDNVLDALTDDPGLVGIEAWKSAQDTTGLTPYDHASLRGHYSYIQLVQRKISSTCKSEHVLNIPGTLVDSNIKQKQSDGHRSSKVSSLQTEKIERSAMLRRCGLCQHKLAYGGVRTALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSM 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02596 1031 MobiDBLite consensus disorder prediction 365 385 - -
Phco7g02596 1031 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Phco7g02596 1031 MobiDBLite consensus disorder prediction 445 474 - -
Phco7g02596 1031 MobiDBLite consensus disorder prediction 301 323 - -
Phco7g02596 1031 Pfam SBP domain 148 221 IPR004333 GO:0003677
Phco7g02596 1031 SUPERFAMILY Ankyrin repeat 801 915 IPR036770 -
Phco7g02596 1031 MobiDBLite consensus disorder prediction 212 233 - -
Phco7g02596 1031 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Phco7g02596 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 916 IPR044817 GO:0003677
Phco7g02596 1031 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Phco7g02596 1031 Gene3D - 140 209 IPR036893 GO:0003677|GO:0005634
Phco7g02596 1031 Gene3D - 783 952 IPR036770 -
Phco7g02596 1031 MobiDBLite consensus disorder prediction 441 474 - -
Phco7g02596 1031 MobiDBLite consensus disorder prediction 364 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02596 Phco-Chr7 44834145 44844037 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco7g02596 SBP 5.8e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02596 7 44834145 44844037 Phco7g02596 7 44834145 44844037 ECH
Phco8g02069 8 22023135 22029939 Phco7g02596 7 44834145 44844037 PCT