Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02587 ATGGAGCAGTTGAAATTGGCTACAAATTCTGACGCCAAAGAGGATAACCCTTTGGGGAGCAAGCCAAAAAATAGCAATGCACTCGAGTCTTCTGACAGTCTGAGAAATAGAAAGGTATCAGCTCGATGGGATCCAGTTGGAGCATGTCGGCCTGTAATTGAAGAAGCACCTGTTTTTTATCCGACTCTCGAAGAATTTGAAGACACACTCAGTTACATAGCAAAGATACGACCCCTAGCTGAACCCCATGGCATATGTAGGATTGTTCCTCCAGCTTGCTGGGTTCCACCCTGTCCACTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCTATGAGGAAAAAGTGTAGGGGAAGGAAGCGAAAACGTAGAAGGCTCTCCAGAACAGGTACATGTAGGAGGAAGCCTGCCAATGCAGCTTCTCAAGCTAAGAATGCTTCTGATTCTGAGGAGAAATTTGGGTTCCAATCAGGATCAGACTTCACGCTTAAAGACTTTCAGCAATACGCTGATTATTTTAAGGAATGCTATTTTGGGTTGAAAGATGTTGATAGAGACAGAACAGTTAGTGACAGTAACCATCCGAAGAGATGGGAGCCCTCTGAGGAAGAAATTGAAGGCGAATACTGGCGAATTGTTGGGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCGAAGGCATCATCCATAACTACGAGTGACTCAGCTCAATATGCCCTGTCTGGTTGGAATCTGAACAATTTCCCACGACTGCCGGGTTCCGTACTAAGCTACGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTTTACTCACTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGAGTACCTGGAAGCCAGGCATCAGCCTTGGAAAATGCAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTAAATGAACTGGTTACCCAGTTTTCTCCTTCTATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACGTTTCCAAGGGCATATCATTCTGGCTTCAATTGTGGCTTCAATTGTGCTGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTCGAGCTTTACAGTTTACAATGCCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCAGCACTGGAAGCTGTACGGGCCATTACAGAGCTAGCTCTGGGAAATGAATCTCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAGTTAAGGCAAGGATAAAGATGGAAGATGAAAGGCTAGATTGTCTTCCAACTCATCTTAAGTTGCTCAAGATGAACAGTGACTTTGATTTGCACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCAGTGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAATTTGTTCTGCTCATGCGGAATGGAGAAAAAAATTGTTCTGCTACGATATACTAGAAATGAGCTAACTAAACTGCTTGAAGCATTAGAAGGAGAATCACATGCTATTAAGGTGTGGGCAAATAAAAACTGTGGAATGGTTTCTGCCAATGTCAGTGAGGTGTGCGTAGATAAATCAAATGTTGAGAAAGATATCTATAAAACCAAGAATTGTGAAGAATTGGATAGCTTATCTGGCTGTGAAAGAACCAAGGATAGGTCAAATTTAAACACACCATGTAGTCCTAATAGTCATATTACTTCTGAGATAGTGCAGTCTGAGTCTCACCCTGTAACTTGTAGTGCAACATATGACAGTATAGATAGTCACAATGACAATAATAGTGATAAAAAGCCTGACACTGACAAGGAAGATAAAATGGATCAGGATGGCTATCTGGATTTGAATCTTGATGTTTTCTCTGGTGAAAATGAAAATCATGTGCTGGATATTGCTGATAATCATCACAACCAAGGTGTTTCAGTAGAGCAAAAAGTATGCTGTTCAGAGGCCAAAAAGGAAGAAGACAGCATGGAACTTTGTGGTGAGGGTAACTTGTCAAACTCGTTTTCTGTTCTGAACACAGATTTCTCGTCAAGTTCAAGGGGTGTTCACAATTATTGTACATTTGATGGTGGAAAATTTGAGCTGGATCTGCAAACAGATTCAGGGAAGCTTCACAACAATCTATTTACAAAAGGAGCCATAGACACTACAGATACTCCCATGGATTTGACAGATGAAAGCTTCTTGGTGCGAATGCTTAGTACTTCTGTCGAGCCTGTAAGTTTGGGATCTGTTGTTCATGGAAAGCTGTGGTGCAGTAAGCAGGCAATATATCCAAAGGGATTCAAGAGTAGAGTTCTCTTCTTTAGCTTTCTTGATCCAACAATAATCTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCATGGAAGAATATCCAAGTGAGGCTTTCACCGATGTCTCATCAGATAATTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATCAAGAGGCGGAGGAGTCTAGGTGAACTAGAACTTCCTACCTTAGAGCTCCTGAAAAGCATTAATGGTCATAGAATGTTTGGCTTCCTTTTACCATCTATTATTCAGGCCATCGAAGTTCAAGATCCCTGTCATATGTGTGTAGAGTACTGGAATCACAAAGTTGCCCCTTCAGGCAGTGTTGTTGATAACTTCACCTTCGGTTCCAGAAGCCCTTTCGGTAATAGCAATACCAAAATTTTTGGTATCAATTTGATTAAGCATAGCTTCCTTGGAGAGATGAAACCGATACTACAAAGGGCAACTCCTGATGAGTTAAGCACACTGCATAAGTTACTGAGCTCTGATGCAAGGTGCTGTGAGTGGAAATTGACATTAATGGCACTGATGGATGAGATCCGAAAAGCTTGTCAATGA 3138 0.4181 MEQLKLATNSDAKEDNPLGSKPKNSNALESSDSLRNRKVSARWDPVGACRPVIEEAPVFYPTLEEFEDTLSYIAKIRPLAEPHGICRIVPPACWVPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMRKKCRGRKRKRRRLSRTGTCRRKPANAASQAKNASDSEEKFGFQSGSDFTLKDFQQYADYFKECYFGLKDVDRDRTVSDSNHPKRWEPSEEEIEGEYWRIVGQPSDEVEVYYGADLETGALGSGFPKASSITTSDSAQYALSGWNLNNFPRLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSQASALENAMRKHLPDLFEEQPNLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRAITELALGNESPKNLKWRSVCGKDGDLTKAVKARIKMEDERLDCLPTHLKLLKMNSDFDLHTERECFSCFYDLHLSAVGCECSPDRYSCLKHANLFCSCGMEKKIVLLRYTRNELTKLLEALEGESHAIKVWANKNCGMVSANVSEVCVDKSNVEKDIYKTKNCEELDSLSGCERTKDRSNLNTPCSPNSHITSEIVQSESHPVTCSATYDSIDSHNDNNSDKKPDTDKEDKMDQDGYLDLNLDVFSGENENHVLDIADNHHNQGVSVEQKVCCSEAKKEEDSMELCGEGNLSNSFSVLNTDFSSSSRGVHNYCTFDGGKFELDLQTDSGKLHNNLFTKGAIDTTDTPMDLTDESFLVRMLSTSVEPVSLGSVVHGKLWCSKQAIYPKGFKSRVLFFSFLDPTIICSYISEVIDAGFLGPLFKVTMEEYPSEAFTDVSSDNCWESVLKRLHHEIKRRRSLGELELPTLELLKSINGHRMFGFLLPSIIQAIEVQDPCHMCVEYWNHKVAPSGSVVDNFTFGSRSPFGNSNTKIFGINLIKHSFLGEMKPILQRATPDELSTLHKLLSSDARCCEWKLTLMALMDEIRKACQ 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02587 1045 MobiDBLite consensus disorder prediction 13 34 - -
Phco7g02587 1045 SUPERFAMILY Clavaminate synthase-like 177 450 - -
Phco7g02587 1045 MobiDBLite consensus disorder prediction 1 34 - -
Phco7g02587 1045 Coils Coil 1041 1045 - -
Phco7g02587 1045 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Phco7g02587 1045 Gene3D - 814 955 - -
Phco7g02587 1045 FunFam Putative lysine-specific demethylase JMJ16 817 955 - -
Phco7g02587 1045 ProSiteProfiles FYR domain FYRC motif profile. 871 961 IPR003889 GO:0005634
Phco7g02587 1045 SMART fyrc_3 875 967 IPR003889 GO:0005634
Phco7g02587 1045 MobiDBLite consensus disorder prediction 129 146 - -
Phco7g02587 1045 Pfam F/Y rich C-terminus 873 961 IPR003889 GO:0005634
Phco7g02587 1045 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Phco7g02587 1045 MobiDBLite consensus disorder prediction 129 166 - -
Phco7g02587 1045 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Phco7g02587 1045 SMART JmjN_1 55 96 IPR003349 -
Phco7g02587 1045 Pfam F/Y-rich N-terminus 822 866 IPR003888 GO:0005634
Phco7g02587 1045 ProSiteProfiles FYR domain FYRN motif profile. 811 869 IPR003888 GO:0005634
Phco7g02587 1045 MobiDBLite consensus disorder prediction 661 688 - -
Phco7g02587 1045 SMART cupin_9 265 431 IPR003347 -
Phco7g02587 1045 Pfam jmjN domain 57 90 IPR003349 -
Phco7g02587 1045 Gene3D Cupin 41 415 - -
Phco7g02587 1045 MobiDBLite consensus disorder prediction 149 166 - -
Phco7g02587 1045 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Phco7g02587 1045 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 769 - -
Phco7g02587 1045 MobiDBLite consensus disorder prediction 670 688 - -
Phco7g02587 1045 SMART fyrn_3 825 869 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02587 Phco-Chr7 44763230 44770283 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco7g02587 JmjC 7.1e-47 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02587 7 44763230 44770283 Phco7g02587 7 44763230 44770283 ECH