Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02580 | ATGAACTTCAGGTTCCATAATCTCTTGGGAGCACCCTACAGAGGGGGCAACGCGGTAATTTCAAACAACACCCTGCTGCTCTCCCCCGTCGGAAACCGCGTCGCCGTCACTGACCTTCTCAAGTCCGAAACCTCCACCCTCCCAATCCAGTCCTCCTCCAACGTTGCCCGCATCGCCATCTCCCCCGACGGCACCTTCCTCCTCGTCGTCGACGACCGCAACCGTTGCCTCTTCATCAACCTACGCCGCCGTGCCCTCCTCCATCGCATCTCCTTCAAGGACCGCGTCGCTGCCGTCGAGTTCAGCCCCGACGGCGCTCTTATCGCCGTTGCCACCGGCAAGCTTGTCCAGATCTGGCGTTCCCCGGCCTTCCGCCGCGAGTACTTCCCCTTCGAACTCGTGCGCACCTTCGCTGAGTTCGACTCAAAAGTAACCACCCTCGATTGGAGCCCCGACTCGAAGTACCTCGTCGTTGGGTCCAAGGATTTAACCGCGAGAATCTTGTGCTTGAAGAAATTGAATAGCGGGGGTAAGAAAAAGCCTTTTATGCTCCTAGGACATAGGGATTCGGTTGTAGGTTCGTTCTTCGGTGTCAATTCGAAAACTAGTAGGGTTTGTAAGGCTTATACGGTTACTAGGGATTGTTATTTGTTTAGCTGGGGTTTTACTTCTGATGGTGGTAGTGAGGCTGAGGTTTCGGAGCCGCCCTCGCCAGGGACGCCGGAGAGGGACGTGGAAGGGAATTTGGAGGTTATTGAAAATGATGGTGTGAAGAAGAGAAAGAAAATTGATGTTCAGGATGGTGATGAGGGTTACCTGAGTAGGGGCAAGTGGGAGTTATTGAGGAAGGATGGGTTTATGCAGGGATGGGCGAAGGTGACGGCATGTGATTATCATAGGGGACTAGATATGGTGGTTGTTGGATTTTCTAATGGTGTGTTTGGGTTATATCAGATGCCAGATTTTGTGTGCATTCATTTGTTGTCTATATCGAGGGAGAAGATTACCACTGCTGTGTTTAATGAGCTTGGGAATTGGTTGACATTTGGCTGTGCCAAATTGGGGCAGCTGCTGGTGTGGGAGTGGCGGTCTGAGAGCTACATTTTGAAGCAGCAGGGTCATTACTTTGATGTGAACTGTGTTGCGTATTCGGCAGACTCGCAGCTTCTTGCCACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACTCTTTCGTCAGGATTTTGCTTTGTTACATTTTCGGAGCACACTAATGCTGTTACGGCTTTACATTTTATGGCAAGTAACAATTGCCTTCTTAGTGCATCTCTTGATGGGACCATTCGTGCATGGGATTTATTACGCTACCGGAATTTTAGGACATTTACAACCCCTTCTTCAAGACAGTTTGTTTCCTTGACAGCTGATCAAAGTGGTGAAGTGATATGTGCAGGCACTTCAGATTCCTTTGAGATTTTTGTTTGGTCAATGAGAACTGGCCGCTTGTTGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGGGCTGGTCTTTTCTCCTACAAATGCTGTCTTGGCTTCATCATCATATGATAAAACTGTTCGGTTATGGGATGTCTTTGATGGAAAAGGAGCAGTTGAAACATTTCCTCACACACATGATATTCTTACAGTAGTTTATCGTCCAGATGGAAGGCAGTTAGCATGCAGCACATTAGACGGGCAAATTCATTTTTGGGACCCAATAGATGGTTTGTTGATGTACACCATAGAAGGTTCTAGAGATATTGCTGGTGGGCGTCTTATGACTGACCGTAGGTCAGCTGCTAACTCAACTTCAGGGAAGTTCTTTACAACCTTGTGTTATTCAGCTGATGGAAGCTACATATTAGCTGGGGGAAGTAGCAGATACATCTGCATGTATGATGTTGCAGATCAGGTTTTACTTCGACGTTTCCAGATAACCCACAATCTCTCATTAGATGGAGTGCTTGACATTTTAAACTCAAAAAATATGACAGATGCTGGCCCTCTAGATTTGATTGATGATGACAACAGTGACATTGAAGAAGGCGTTGAGAAACAAACACGAGGGAAACTAGGATTTAACTTACCAGGATCTATGCCTAACCGTGGAAGGCCTATTATTCAGACAAAGTGCCTGAGAATTGCACCTACAGGGCGTAGTTTTGTTGCAGCAACAACTGAGGGGGTTTTGGTTTATTCTGTTGATGAATCTTTCATATTTGATCCCACTGACCTCGACATAAATGTTACACCAGAGGCTGTTGAAGAAGCTCTTCGTGAAAATCAACCAAGTAAAGCCTTGATCCTTAGCCTTCGCTTGAATGAGGATTCTTTCATTAAAAAATGTATATTTGCGGTTAGTCCGGCAGATATTCCAGCAGTTGCGACATCAATCCCTTACAAATATATCCAACGATTAGTGGAGGCATTTGCAGATCTTTTGGAAAACTGCCCACATTTGGAATTTATACTTAGATGGTGTCAGGAGCTCTGCAAGGCCCATGGGAATTCTATTCAGCAGAACTCTCGCAATCTGTTACCATCATTAAAATCTTTGCAGAAAGCAATCACTAAAATTCATCAGGATCTAGCAGATACATGTTCCTCCAACGAATATATGCTGCGATATTTATGTTCTTCTGGTACCAAGAAATGA | 2661 | 0.46 | MNFRFHNLLGAPYRGGNAVISNNTLLLSPVGNRVAVTDLLKSETSTLPIQSSSNVARIAISPDGTFLLVVDDRNRCLFINLRRRALLHRISFKDRVAAVEFSPDGALIAVATGKLVQIWRSPAFRREYFPFELVRTFAEFDSKVTTLDWSPDSKYLVVGSKDLTARILCLKKLNSGGKKKPFMLLGHRDSVVGSFFGVNSKTSRVCKAYTVTRDCYLFSWGFTSDGGSEAEVSEPPSPGTPERDVEGNLEVIENDGVKKRKKIDVQDGDEGYLSRGKWELLRKDGFMQGWAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSADSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNAVTALHFMASNNCLLSASLDGTIRAWDLLRYRNFRTFTTPSSRQFVSLTADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLSGHEAPVHGLVFSPTNAVLASSSYDKTVRLWDVFDGKGAVETFPHTHDILTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTTLCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLDILNSKNMTDAGPLDLIDDDNSDIEEGVEKQTRGKLGFNLPGSMPNRGRPIIQTKCLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEALRENQPSKALILSLRLNEDSFIKKCIFAVSPADIPAVATSIPYKYIQRLVEAFADLLENCPHLEFILRWCQELCKAHGNSIQQNSRNLLPSLKSLQKAITKIHQDLADTCSSNEYMLRYLCSSGTKK | 886 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02580 | 886 | Pfam | WD domain, G-beta repeat | 133 | 167 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | Pfam | WD domain, G-beta repeat | 545 | 573 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | Pfam | WD domain, G-beta repeat | 494 | 531 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | Pfam | WD domain, G-beta repeat | 409 | 445 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | Pfam | WD domain, G-beta repeat | 372 | 402 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | FunFam | Periodic tryptophan protein 2 | 22 | 248 | - | - | |
| Phco7g02580 | 886 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 432 | 446 | IPR019775 | - | |
| Phco7g02580 | 886 | Gene3D | - | 288 | 483 | IPR015943 | GO:0005515 | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 413 | 446 | - | - | |
| Phco7g02580 | 886 | PRINTS | G protein beta WD-40 repeat signature | 432 | 446 | IPR020472 | - | |
| Phco7g02580 | 886 | PRINTS | G protein beta WD-40 repeat signature | 518 | 532 | IPR020472 | - | |
| Phco7g02580 | 886 | PRINTS | G protein beta WD-40 repeat signature | 390 | 404 | IPR020472 | - | |
| Phco7g02580 | 886 | Gene3D | - | 484 | 667 | IPR015943 | GO:0005515 | |
| Phco7g02580 | 886 | Pfam | Dip2/Utp12 Family | 776 | 881 | IPR007148 | - | |
| Phco7g02580 | 886 | SUPERFAMILY | Tricorn protease domain 2 | 541 | 743 | - | - | |
| Phco7g02580 | 886 | PANTHER | WD40 REPEAT PROTEIN | 1 | 885 | IPR027145 | - | |
| Phco7g02580 | 886 | SUPERFAMILY | DPP6 N-terminal domain-like | 8 | 225 | - | - | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 371 | 407 | - | - | |
| Phco7g02580 | 886 | CDD | WD40 | 324 | 627 | - | - | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 541 | 573 | - | - | |
| Phco7g02580 | 886 | SUPERFAMILY | WD40 repeat-like | 127 | 579 | IPR036322 | GO:0005515 | |
| Phco7g02580 | 886 | Gene3D | - | 21 | 224 | IPR015943 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 83 | 120 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 448 | 489 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 40 | 80 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 535 | 573 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 364 | 403 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 406 | 445 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 492 | 531 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 130 | 169 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 321 | 361 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | SMART | WD40_4 | 596 | 635 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 541 | 573 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 413 | 454 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 499 | 532 | - | - | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 371 | 412 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 499 | 540 | IPR001680 | GO:0005515 | |
| Phco7g02580 | 886 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 518 | 532 | IPR019775 | - | |
| Phco7g02580 | 886 | FunFam | Periodic tryptophan protein 2 | 279 | 482 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02580 | Phco-Chr7 | 44642573 | 44647354 | Dispersed |