Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02566 | ATGATGAAGTTTTCTTCAAGTATTATTGTGCCTGGGGAAAAACTTTCTTTTCTTCCGCTGAACCCTAAGCTAATTCGTGTCAGTGTTCTTCCAATTGTTGCTGCGCAGGCGCGTGTCTTGGGAGCACAAGATACGGATATGGATCACCATGAGGATGAAAGTAACAGCAAACAAGACGATGAGGAAGCTGTTGCTCGCCTCGAGGAAATAAAAAAATCTGTTGAGGCAAAGATGGCTTTACGTCAAAGCAATTTGAATCCTGAAAGGCCTGACTCAGGATTCTTAAGGACATTGGATTCCAGTATTAAGCGTAACACTGCAGTTATTAAGAAGCTGAAGCAGATCAATGAGGAGCAGCGTGAATCTCTGATGGATGAGTTGAGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCCGTGACTGCAATATGTGATGCCAAACTCAGAAGTTCTGATATACAAGCTGCAGTTCAGATCTGTTCTTTGCTTCATCAAAGGTACAAGGACTTTGCGCCAAGCCTGATTCAAGGGCTTCTCAAGGTCTTCTCTCCTGGAAAACCTGGCGATGAATCAGATGCTGATAAAAACTTGAAGGCAATGAAGAAGCGCAGCACCCTGAAACTTCTATTGGAACTTTTTTTTGTTGGCGTTATTGAAGATGGTGGCATTTTTATAAATATCATAAAAGATCTTACCAATGGGGAACAGCTGAAAGATCGGGAAGCTGCACAAACAAGTTTGACCCTTCTTTCCAGTTTTGCTCGTCAGGGAAGAATTTTTCTTGGACTCTCAGTCAGTGGGCCGGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATCACAGCAGATCAGAAGAAAGTTTTCCGGAAGGCATGCTATTCCTTTTATGATGCTGCAGCTGAACTGCTTCAGTCTGAGCATTCTTCACTTAGATTAATGGAGCATGAAAATTCGAAGATTTTGAATGCAAAAGGAGAGCTAAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCCTTTGACCATTTGTACCGAAATGTTTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGACACACGACTAGGGTTACCAGTGGTGAGGAGGGTATTGCTTCTGCTTCTGGTAAAGATTCTTCTGTTGTTGAACCGATATGGGATGATGAAGATACAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCGTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCAAAAAGCAGTGAGCAATCTTCAAAGAGTCAAGACCAACCAAATGAAATATTACCTGAATCAGACAAAGGTCAACAGACCACCCATGAAAGTGGAGAGATCTCTACAGAGTCTAATGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGTGAAGGATAAGGAAGAAAAAGACAAGTCTAAAGAATTGGACAGAGAGAAGGAAAAGGAAAAAGACAAAGATAATGATAAAAAGGGTGAAAATGAAAAAGACAAACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCGGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTCGAGTTCTGCTATCTGAATTCAAAATCGAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTACCAAGGACATCTCTAGAACTGCTAGCATATTATTCACGCATGGTTGCTACACTCTCAACTTGTATGAAGGATGTATCCTCCATTTTGTTACAGATGTTGGAGGAGGAATTCAGTTTCTTAATAAATAAAAAGGATCAGATGAACATTGAGACAAAGATAAGGAACATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCCTCTCCTGGTCTAGTCTTCAGTTGTTTGAAGGCCTGTTTAGATGATTTCACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCCCCAGAAACTAGTATAAGAATGGCTAACATGTTGGAGATATTGATGCGCTTGAAAAATGTAAAAAATTTGGATCCGAGACATAGCACTTTAGTGGAGAATGCATACTACCTTTGCAAACCACCAGAAAGATCTGCACGAGTAGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGACAAGTCTACCATTGAGCATGTGCTGAGGCAACTGCGCAAATTACCGTGGAATGAATGTGAGCCATATCTTTTGAAATGCTTCATGAAGGTCTACAAAGGAAAATATGGTCAGATCCACCTGATTTCATCTCTTGCTCTTGGATTAAGTCGGTATCATGATGAGTTTGCTGTAGCTATTGTTGATGAGGTTCTTGAGGAGATTAGAGTTGGGCTAGAGTTAAATGACTACGGGATGCAGCAAAGACGCATTGCTTACATGCGATTCTTAGGAGAGCTTTACAACTATGAGCATGTAGACTCTTCTGTTATTTTTGAGACACTATATCTCATTCTCATCTATGGTCACGGGACATCAGAGCAAGATGTACTTGATCCACCTGAAGATTGTTTTCGCATAAGGTTGATAATTACTCTGCTTGAAACTTGTGGGCATTACTTTGGTCGTGGCTCTTCTAAGAGGAAACTTGATCGGTTCCTAATACACTACCAGAGGTATATTTTAAGCAAAGGGGCTCTGCCTCTGGACATCGAATTTGACTTACAGGATCTGTTTGCGGATTTACGACCCAATATGGTTCGGTACACTTCTATTGAGGAAGTGAATGCAGCTCTAGTAGAACTTGAGGAACATGATCGAATAGTTTCTTCTGATAGGGCCAGTAGTGAAAAGCATTCTGACAATGAGAAGCCTTCGAGTAGGACCACTTCCACTACTACTGTGGTTGGCAATGGACAGAGCATTGATCATGGTATGGAGGAAAATGGGGTGCAAGATGATGTTAATGACAGTGAGACTGATTCAGGGAGTGACACAATTGATGTAGAGGGTCATAATGATGAAGAGTTGGATGAGGACAATCACGATGATGGCTGTGAAACTGAGGATGATGAAGATGACGATGATGAAGGGCCTGGACCTGCTTCTGATGAGGAGGATGAAGTGCATGTGAGACAAAAAGTGACAGAGGTGGACCCTCTGGAAGAAGCTGATTTCGATCAGGAGCTCAAGGCTGTAATGCAGGAGAGTATGGAACAGAGAAGACAGGAGCTACGGGGTCGTCCTACGTTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTACCAAGGATCACCACGGGAGGGGCGTTGGTGGGGAAAGTGGTGATGAGGCACTGGATGAGGATACAGGTGGAAACAAAGAGGTTCAGGTGAGAGTTCTTGTGAAGCGTGGAAACAAGCAGCAAACAAAGCAGATGTTCATCCCACGGAATTCATCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCCGAGCTTCAAGAGAAAGAAGACATCAAGAGGCTTGTTTTGGAGTATAATGACAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCGGCAAACTGGATGCCAAGTGTAGGTAACAAGACCAGTGGCCGCGGTAGCACTTTGGATGGAAACAGTGGCAGGGGTAGTGGATCAAGACATCGGCATCATAATTATTCTGGCAGTGGAGTATATTACAGCAGAAGAAAGTGA | 3714 | 0.423 | MMKFSSSIIVPGEKLSFLPLNPKLIRVSVLPIVAAQARVLGAQDTDMDHHEDESNSKQDDEEAVARLEEIKKSVEAKMALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFSPGKPGDESDADKNLKAMKKRSTLKLLLELFFVGVIEDGGIFINIIKDLTNGEQLKDREAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSFDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGIASASGKDSSVVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEPKSSEQSSKSQDQPNEILPESDKGQQTTHESGEISTESNALPEAESTERVKDKEEKDKSKELDREKEKEKDKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLAYYSRMVATLSTCMKDVSSILLQMLEEEFSFLINKKDQMNIETKIRNIRFIGELCKFKIASPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQIHLISSLALGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILIYGHGTSEQDVLDPPEDCFRIRLIITLLETCGHYFGRGSSKRKLDRFLIHYQRYILSKGALPLDIEFDLQDLFADLRPNMVRYTSIEEVNAALVELEEHDRIVSSDRASSEKHSDNEKPSSRTTSTTTVVGNGQSIDHGMEENGVQDDVNDSETDSGSDTIDVEGHNDEELDEDNHDDGCETEDDEDDDDEGPGPASDEEDEVHVRQKVTEVDPLEEADFDQELKAVMQESMEQRRQELRGRPTLNMMIPMNVFEGSTKDHHGRGVGGESGDEALDEDTGGNKEVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPANWMPSVGNKTSGRGSTLDGNSGRGSGSRHRHHNYSGSGVYYSRRK | 1237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02566 | 1237 | PANTHER | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 | 59 | 1185 | IPR039762 | GO:0000184 | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 422 | 465 | - | - | |
| Phco7g02566 | 1237 | FunFam | Regulator of nonsense transcripts UPF2 | 54 | 364 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 944 | 1060 | - | - | |
| Phco7g02566 | 1237 | Coils | Coil | 474 | 494 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 1181 | 1237 | - | - | |
| Phco7g02566 | 1237 | Gene3D | - | 714 | 944 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 1190 | 1215 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 420 | 507 | - | - | |
| Phco7g02566 | 1237 | SMART | if4_15 | 516 | 704 | IPR003890 | GO:0003723|GO:0005515 | |
| Phco7g02566 | 1237 | SMART | if4_15 | 719 | 920 | IPR003890 | GO:0003723|GO:0005515 | |
| Phco7g02566 | 1237 | SMART | if4_15 | 102 | 324 | IPR003890 | GO:0003723|GO:0005515 | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 944 | 960 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 43 | 62 | - | - | |
| Phco7g02566 | 1237 | Pfam | Up-frameshift suppressor 2 | 1039 | 1175 | IPR007193 | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 466 | 507 | - | - | |
| Phco7g02566 | 1237 | Coils | Coil | 587 | 607 | - | - | |
| Phco7g02566 | 1237 | Gene3D | - | 473 | 712 | - | - | |
| Phco7g02566 | 1237 | FunFam | Regulator of nonsense transcripts UPF2 | 474 | 712 | - | - | |
| Phco7g02566 | 1237 | Gene3D | - | 54 | 364 | - | - | |
| Phco7g02566 | 1237 | Pfam | MIF4G domain | 519 | 703 | IPR003890 | GO:0003723|GO:0005515 | |
| Phco7g02566 | 1237 | Pfam | MIF4G domain | 721 | 915 | IPR003890 | GO:0003723|GO:0005515 | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 1039 | 1060 | - | - | |
| Phco7g02566 | 1237 | SUPERFAMILY | ARM repeat | 714 | 939 | IPR016024 | - | |
| Phco7g02566 | 1237 | Coils | Coil | 57 | 77 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 359 | 387 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 961 | 975 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 1006 | 1038 | - | - | |
| Phco7g02566 | 1237 | SUPERFAMILY | ARM repeat | 110 | 229 | IPR016024 | - | |
| Phco7g02566 | 1237 | SUPERFAMILY | ARM repeat | 513 | 707 | IPR016024 | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 1096 | 1126 | - | - | |
| Phco7g02566 | 1237 | FunFam | Regulator of nonsense transcripts UPF2 | 715 | 945 | - | - | |
| Phco7g02566 | 1237 | MobiDBLite | consensus disorder prediction | 1098 | 1124 | - | - |