Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02543 ATGGGTCGTCCTAAATTGATCTTGAAACCCATTACAAATGCGAGAGATCGAGATTTGGCTTTCATGAAGAGAAAGAAGGCACTGATGAAGACTATATCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTTGCTTGATTATATATGATGGCAAAGGTGATTCTCCACCATTGACTTGGCCCCAAGACCCCACTGAGATGCATTCCATCATCCAAAGGTATGAGAGTATGATGTCTGAGAAAATTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGATTAGGAAGAACATGGTTGACAGTGAGATCTCCAAAGTTCAAAAAGATATCCTTGAGACCAAATATCCAACTTGGCATCCATTATTCAACACCCTTGGTGCTGAAGAATTGAAGAATTTCATTGCTAGATTGGACATTAAGCTTGAAGCTTGCAATCAACGAAAAAAAATGTTTGAATGCAAGAAACAAACTGAAGCCCAATTCAGTTTCAAGCAATGCCTGATTCAACCAGAATGTGTTGCTCCAAACCCAAACCAACTGATTTCCATGCAGGATCTCTTCCAAAACCAACTTCTTCTTGCTCCAATGAAGCCTTTTAATGCTAACCTTGCACCATCTCTCCAACACAATTTTGGAAAAGGTTCTAGTTCTCTATCCCAAGCGTTTAACTTTGATGCAAATCTTATGCAATTGAAGGCAGGAAACAAAGTGGTGGTGGATAAAACCAATGAAGTTGCTGTGCCACCAGAATATGCATGCCAAATTGATGTGTTTAAGAATCCTTCAAACCAATTTGATGTGCCTGGAGATATTCTTGATGATTCTTTGAATTTTTTTAACCAACTTGGTGAAATACAAAGTTTGAATCAACACTGGGGGAATAATCAACATAATGCACTTGTGATTGGAGGAAGTTCCACAACAATGAATGGTGGTGTTACTACTTATGATACAAATTTTCATGGAAATCAGTACAATCCTGAGTCCTCTCTTTGCAATTACAATGGAGTTATGCAATCCTATAACAATGATCCATCATGGCAGAATATTGGTTTTCAATAA 1059 0.3768 MGRPKLILKPITNARDRDLAFMKRKKALMKTISEFCSVCGVKACLIIYDGKGDSPPLTWPQDPTEMHSIIQRYESMMSEKIPKNFDLNNFFEIRKNMVDSEISKVQKDILETKYPTWHPLFNTLGAEELKNFIARLDIKLEACNQRKKMFECKKQTEAQFSFKQCLIQPECVAPNPNQLISMQDLFQNQLLLAPMKPFNANLAPSLQHNFGKGSSSLSQAFNFDANLMQLKAGNKVVVDKTNEVAVPPEYACQIDVFKNPSNQFDVPGDILDDSLNFFNQLGEIQSLNQHWGNNQHNALVIGGSSTTMNGGVTTYDTNFHGNQYNPESSLCNYNGVMQSYNNDPSWQNIGFQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02543 352 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Phco7g02543 352 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco7g02543 352 PANTHER MADS BOX PROTEIN 5 142 - -
Phco7g02543 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Phco7g02543 352 Coils Coil 126 146 - -
Phco7g02543 352 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Phco7g02543 352 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02543 Phco-Chr7 44280301 44281359 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco7g02543 SRF-TF 3.3e-10 No_clan