Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02540 ATGGGTTTTCTGGCCCCTTTTCAGAAGGGTGATGCAATGAGGCAGGCTTTTGATCCTTCTTCTTTTGGTCCTTCCAAGATTCCAGGTATAAAAATACCTGGAAAATTGGGGAATGGTGCGTGGGATGCTTTGTCCGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGAATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGATACTCATGCTATTGGACCCGTGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGTATAATGGATGATTTCGACCTTAGTGGTTTGCCTGGATCCCTTGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTCGAAACTGATCCACAGGAAAGTCTCTCTGGGGGTATTTCTAAGTTAAGCTTTGCTGATGGTAGTGTTGGTAATGGATTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCGGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCTCTTTTTGAGCTTTATGGGGATATCAGAACCCTATATACTGCATGCAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCTGTGTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCTCTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTAGAAGAAATTTGATGCTCCAATTGAACCAAGAGCTTGACCAAGATGAAACTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCCGTTGAGCAGAATTCAATGCAAAATATCAGTCATTCTCCTGGTTCTAGAATCCTGAGCCCAACAACAGGCAATCATTTACCTGGATTAGCTTCAATTTTGCAACCACAGATATCTAACACTGTGAAGGCAGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCAAGGAGAGCACATATTTACTGGTTTGAGTTCTTCACAAGGAGCTAGTTTTCAATCGCATTCACTTCCAGAGCCAAAATTCAGCCAGTATCGTGGAGCATTGTCCTCATTTGGTCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCTATTTACATCGAGTGGAAAGAGCCATGCCTTCCCATTTTCTAGTCAGAATAGCTCTTTTGTTGGTTCATCCCAGCATCATCAGAATCATCACGTTGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAGTCTAGGGCACACCGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATCCTAGCATCACTATCCCTAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTCCGAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTACCACTTTGGAGGGTTTGGCTGAGCGTGCTCGGAGTAGATGGATAGAGAACAATGTGAGCCAGGCTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAAATTAGAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAACGTGGGCTATGCATTTATCAATATGCTGTCACCCTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAGTCTGCCCTTGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGTCGACCTATTCTTTTCCACTCAGAGGGCTCTGAAGCCGGTGATCTGATTGTACAAGAGCATCTTCCCTCCATCCCCAACAATCTAAACATTCAGGCACTAAAGTCAAGTGAGTTACATTCAAGTGATTTTGCAGGGAGTCCTCCGAACGTAGGCCCTTCTGCAAGCTTGGATGCAAAATAA 2619 0.4269 MGFLAPFQKGDAMRQAFDPSSFGPSKIPGIKIPGKLGNGAWDALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSEFKKLHQDAEGDGSLEDGDTHAIGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSGGISKLSFADGSVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDETRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTGNHLPGLASILQPQISNTVKAAAIGNDLGRSSQGEHIFTGLSSSQGASFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHLFTSSGKSHAFPFSSQNSSFVGSSQHHQNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNPSITIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPTTLEGLAERARSRWIENNVSQADSKKQFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPSIPNNLNIQALKSSELHSSDFAGSPPNVGPSASLDAK 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02540 872 FunFam Protein MEI2-like 1 290 385 - -
Phco7g02540 872 Pfam RNA recognition motif 2 706 802 IPR007201 -
Phco7g02540 872 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 364 IPR000504 GO:0003723
Phco7g02540 872 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 279 IPR000504 GO:0003723
Phco7g02540 872 MobiDBLite consensus disorder prediction 853 872 - -
Phco7g02540 872 SMART rrm1_1 207 275 IPR000504 GO:0003723
Phco7g02540 872 SMART rrm1_1 708 784 IPR000504 GO:0003723
Phco7g02540 872 SMART rrm1_1 292 360 IPR000504 GO:0003723
Phco7g02540 872 FunFam MEI2-like protein 5 isoform 2 195 289 - -
Phco7g02540 872 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 272 IPR000504 GO:0003723
Phco7g02540 872 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 358 IPR000504 GO:0003723
Phco7g02540 872 CDD RRM3_MEI2_like 709 794 IPR034454 -
Phco7g02540 872 CDD RRM2_MEI2_like 290 360 - -
Phco7g02540 872 SUPERFAMILY RNA-binding domain, RBD 203 366 IPR035979 GO:0003676
Phco7g02540 872 Gene3D - 195 289 IPR012677 -
Phco7g02540 872 Gene3D - 290 388 IPR012677 -
Phco7g02540 872 CDD RRM1_MEI2_like 205 281 IPR034453 -
Phco7g02540 872 SUPERFAMILY RNA-binding domain, RBD 708 792 IPR035979 GO:0003676
Phco7g02540 872 PANTHER RNA RECOGNITION MOTIF-CONTAINING 51 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02540 Phco-Chr7 44230407 44237678 Dispersed/Transposed