Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02536 ATGCCGCAATGGTATGACATCTCCATGGTAGCACACCCTTTATCTCATCCCTTCTTTTGTCTCTCTCTCTCTCTCTATGCCTCACTCTCTTCACTCTCCGCCATGCCCCCAGCCGCCGGAGCCGTCGCGTTACACTCTTCCCTTTGCTCCACCCCTTCTGAGAAACCATACTCTCCTCTAAGATCAAACCATCTTCTTGTGGCACCCAAACCCAAAAGCCTCCTCCAAAACCACCCACTTTATCCCCCAACCCACGCCAAACTCTCCCTTGAATTCAAAGAGAAAATTCTCTGCCTTGAGGTGATGGGTATTGATGCAGGCAAAGCAATCTCCCAAAACCCTGATCTCCGTACGGCCACCATGGAATCCATTCAATCCATCATCACCTTCCTTTTCTCCAATGGCATTCTAGAAAAGGACCTGCCCAGAATCTTTGGCATGTGCCCCAAGATTCTCACCGCTGACATCAAAACTGATCTTTCCCCAGTTTTTGATTTCATCTTGAATGAACTCAAAGTTCCCGAACATAGCTTCAGGAGGGTGGTCAATAAGTGCCCAAGATTGCTTGCATCCAGTGTGAAAGATCAGCTTAGGCCAGCTTTGGTTTACCTAAGGAGACTTGGATTCAAGGATTTGGGGGCCTTGGCTTATCAAGATTCTGTTCTCTTGGTGTCTAATGTAGAACACACCCTCATCCCTAAACTTAGATTTCTGGAGACTTTGGGACTTTCCAAGGATGAGATTAGGAGTATGGTGTTGAGATGTCCAGCACTGCTCACTTTCAGTATAGAAAATAATTTTCAGCCAAAGTATGAGTATTTAGCTGGAGAAATGGGGAGAAAATTGGAGGAGCTGAAAGAGTTTCCTCAGTACTTTGCTTTTAGTTTGGAGAACAGGATAAAACCTAGACACATGGAGGTTGTGCAGAGTGGGATCACTTTACCTTTGTCAGTGATGCTTAAAAGCAATGATGAAGAATTTAGGGAGTTGGTAAAGCAGGGGGGTGGTTGA 1011 0.458 MPQWYDISMVAHPLSHPFFCLSLSLYASLSSLSAMPPAAGAVALHSSLCSTPSEKPYSPLRSNHLLVAPKPKSLLQNHPLYPPTHAKLSLEFKEKILCLEVMGIDAGKAISQNPDLRTATMESIQSIITFLFSNGILEKDLPRIFGMCPKILTADIKTDLSPVFDFILNELKVPEHSFRRVVNKCPRLLASSVKDQLRPALVYLRRLGFKDLGALAYQDSVLLVSNVEHTLIPKLRFLETLGLSKDEIRSMVLRCPALLTFSIENNFQPKYEYLAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQSGITLPLSVMLKSNDEEFRELVKQGGG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02536 336 Pfam mTERF 99 210 IPR003690 GO:0003690|GO:0006355
Phco7g02536 336 Pfam mTERF 222 327 IPR003690 GO:0003690|GO:0006355
Phco7g02536 336 FunFam Transcription termination factor MTEF1, chloroplastic 167 334 - -
Phco7g02536 336 PANTHER CGI-12 PROTEIN-RELATED 49 331 IPR003690 GO:0003690|GO:0006355
Phco7g02536 336 Gene3D Transcription termination factor 3, mitochondrial 122 333 IPR038538 -
Phco7g02536 336 SMART mt_12 249 281 IPR003690 GO:0003690|GO:0006355
Phco7g02536 336 SMART mt_12 179 210 IPR003690 GO:0003690|GO:0006355
Phco7g02536 336 SMART mt_12 142 174 IPR003690 GO:0003690|GO:0006355
Phco7g02536 336 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Phco7g02536 336 SMART mt_12 213 244 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02536 Phco-Chr7 44180940 44181950 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco7g02536 mTERF 1.2e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02536 7 44180940 44181950 Phco7g02536 7 44180940 44181950 ECH