Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02494 ATGATTGTCTTTGCATCAGGCAACAATACTGATCATTTGGCACTACTCAAATTCAAAGAATCCATATCCAGTGATCCTTATGGAGTTTTGCTATCTTGGAATAGTTCTACTCACTTTTGTAATTGGGATGGAATCACATGCAATTCCATGCATAAAAGAGTTACAAAGTTAGATTTGAAGGGGTACAAGTTGAAGGGATTCATACCTCCTCACCTGGGCAATCTCTCTTACATGAGAATCTTCTACCTTGACAACAACTTCCTGTACGGAAACATCCCACAAGAATTCGGACAATTGTCACAACTTCAGGATCTCTCTGTTGGAAACAACTCATTGGTAGGAGAAATTCCTACAAACTTGACAGAGGGAGAAGTTCCACATGAATTGTGTCACCTAAAAGACTTGGTAAAGATATTTGTACCCGTCAACAATTTGATTGGAACATTTCCTTCTTGCTTTTACAACATGTCATCTCTGATTGTGATCTCAGCTACAAAAAATCAGTTTAATGGATCTCTTCCACCGAACATGTTCCACACCCTCCCCAATCTCAAACAGTTTCATATTGCTCTAAATCAAGTCTCAGGTTCAATCCCACCTTCCATTACAAATGCATCTATCCTTTCATTACTTGAGATAGGTGCCAATCAATTCACAGGACAAGTTCCAGGTTTGGAAAAGCTACAAGATCTTTTTTATCTAGGTTTGTCTCAAAACAATCTAGGTGACAATTCAACTAATGATTTGAAGTTTTTGAAATCATTTACAAACTATAGTAGTTTGCAGATGTTGGATATATTTGACAATAATTTTGGAGGTCAATTGCCAAATTCTTTAGCCAATTTGTCCACCCAACTCAACTGGTTGTATCTTGGAGGTAATAAAATATCAGGAGATATTCCTACATCAATGGGAAATCTAATTGGCTTGACTGTATTGGATATGAGATATAACCGCTTTAGTGGGATTATTCCATCAACTTTTGGAAAGTTTCAAAAAATGCAAAAGTTAGTCTTAAGTGAAAATCAGTTGTCAGGACATATAGGAGACTTTGTTGGCAACCTTAGTCAATTGTTTTTTTTGGATATGAGAAGAAATATGTTAGAAGGAAATATACCTTCGAGTATAGGAAATTGCCAAAAGTTACAACATCTGGGTCTTTCACAAAACAATTTTACAGGAACCATACCTTTAGAGATCTTTAATATTTCCTCTTTGACAAACTTGTTGAAATTGTCACAAAACTCATTGAGTGGCAGTATACCAAAAGAAGTGGGAAAGCTAAAAAATGTTGATTATCTAGATGTGTCTGAGAATCAGTTGTCTGGTCACATTCCTGAAACTATTGGAGAATGCATAACATTGGAGTACCTTTATTTGCAAGGAAATTCTTTACAGGGAAGCATACCATCCTCTTTAGCATCACTCAAAGGTCTTCAAAGTTTAGACCTATCACGAAACAACTTGTCTGGATCAATACCTACTGATTTGCAGAATATTTCTTTCTTAGAATATTTCAATGTATCCTTCAACATGTTGGATGGCGAAGTGCCAACTGGAGGTGTGTTTCAAAATGCAACCGGCTTTGTGGTGAATGGAAATGATAACCTTTGTGGAGGTATTTCCAAACTACACCTACCACCATGTCTTTTCAAAGGTAAGAAACCTGCAAAACACCATAAGTTTAGGTTGATAACAGTGGCAGTTAGTGTGGTTGTTTTTCTTCTCATATTGTCAATTATTCTAACTATCCACTGGATGAGAAAAAGGAATAACAAACCATCTTTGGATTCAACAATGATTGACCAGCTAGCTAAAGTTTCATACCAAAGCCTACACAATGGAACTGATGGGTTCTCAGCAATAAATTTGATTGGCTCTGGAAATTTTAGCTCTGTCTATAAAGGAACTCTTGAGTTCGAAGATAAAGTTGTTGCTATAAAGGTCCTAAATCTTCAAAAAGAAGGATCTCACAAGAGCTTCATAGCTGAATGCAACACACTCAAAAGTATTAAACATCGAAATCTGCTTAAGATTTTAACATGCTGTTCAAGCACAGACTACAAAGGTCAAGAATTTAAAGCTTTAATTTTTGAGTACATGAAGAATGGAAGCTTAGAACAATGGCTACATCCAAGGACACAGGGTCTAGAACAACATCCGAGATTATTAAACCTTGGTCAAAGATTAAATATCATCATTGACGTTGCTTCTGCAGTACATTATCTTCATCATGAATGTGAGCAATCGATTGTTCATTGTGATTTAAAGCCAAGCAATGTTCTTCTTGATGATAACATGACTGCTCATGTGTCTGATTTTGGCATAGCAAGAATTCTCTCAACTATTAATGGTACTGGTAAGCAAACGAGTACAATTGAGTTCAAGGGGACAATTGGCTATGCTCCCCCTGAGTATGGAATGGGTTCTGAGGTGTCTATGAATGGTGACATGTATAGTTTTGGGATCCTGTTATTGGAAATGTTTACTGGAAGAAGACCCACAGAAGAAATCTTTAAAAATGGTCAAAATTTGCATAAGTTTGTGGAAAATTCATTGCTTGATAATCTCTTACAAATTTTGGACCCAACACTTGTACTAAAGCATGAAGGAGCAACAATAGAAAATGAGAATAGTCAAAATCTTACTGCAGTTGATGAAAACTACTTAGTTTCACTCTTTAAGATTGGACTTGCTTGCTCAATGGAATCACCCAAAGAAAGAATGCAAATTATGGAGGTCACTAAAGAACTAATCAAAATCAGAAAAGCATGGTATTATTCTCTTTGTATTAATGAAAAAAAATGTGCGGAGGCATTGAGAGAGTGA 2829 0.3606 MIVFASGNNTDHLALLKFKESISSDPYGVLLSWNSSTHFCNWDGITCNSMHKRVTKLDLKGYKLKGFIPPHLGNLSYMRIFYLDNNFLYGNIPQEFGQLSQLQDLSVGNNSLVGEIPTNLTEGEVPHELCHLKDLVKIFVPVNNLIGTFPSCFYNMSSLIVISATKNQFNGSLPPNMFHTLPNLKQFHIALNQVSGSIPPSITNASILSLLEIGANQFTGQVPGLEKLQDLFYLGLSQNNLGDNSTNDLKFLKSFTNYSSLQMLDIFDNNFGGQLPNSLANLSTQLNWLYLGGNKISGDIPTSMGNLIGLTVLDMRYNRFSGIIPSTFGKFQKMQKLVLSENQLSGHIGDFVGNLSQLFFLDMRRNMLEGNIPSSIGNCQKLQHLGLSQNNFTGTIPLEIFNISSLTNLLKLSQNSLSGSIPKEVGKLKNVDYLDVSENQLSGHIPETIGECITLEYLYLQGNSLQGSIPSSLASLKGLQSLDLSRNNLSGSIPTDLQNISFLEYFNVSFNMLDGEVPTGGVFQNATGFVVNGNDNLCGGISKLHLPPCLFKGKKPAKHHKFRLITVAVSVVVFLLILSIILTIHWMRKRNNKPSLDSTMIDQLAKVSYQSLHNGTDGFSAINLIGSGNFSSVYKGTLEFEDKVVAIKVLNLQKEGSHKSFIAECNTLKSIKHRNLLKILTCCSSTDYKGQEFKALIFEYMKNGSLEQWLHPRTQGLEQHPRLLNLGQRLNIIIDVASAVHYLHHECEQSIVHCDLKPSNVLLDDNMTAHVSDFGIARILSTINGTGKQTSTIEFKGTIGYAPPEYGMGSEVSMNGDMYSFGILLLEMFTGRRPTEEIFKNGQNLHKFVENSLLDNLLQILDPTLVLKHEGATIENENSQNLTAVDENYLVSLFKIGLACSMESPKERMQIMEVTKELIKIRKAWYYSLCINEKKCAEALRE 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02494 942 Gene3D Transferase(Phosphotransferase) domain 1 701 935 - -
Phco7g02494 942 SMART serkin_6 619 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02494 942 ProSitePatterns Protein kinases ATP-binding region signature. 625 648 IPR017441 GO:0005524
Phco7g02494 942 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 701 929 - -
Phco7g02494 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 589 700 - -
Phco7g02494 942 PANTHER OS04G0122200 PROTEIN 17 922 - -
Phco7g02494 942 Gene3D Phosphorylase Kinase; domain 1 599 700 - -
Phco7g02494 942 Gene3D Ribonuclease Inhibitor 121 241 IPR032675 -
Phco7g02494 942 Pfam Leucine rich repeat 454 513 IPR001611 GO:0005515
Phco7g02494 942 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515
Phco7g02494 942 SUPERFAMILY L domain-like 8 321 - -
Phco7g02494 942 CDD STKc_IRAK 625 921 - -
Phco7g02494 942 Gene3D Ribonuclease Inhibitor 10 120 IPR032675 -
Phco7g02494 942 SUPERFAMILY Protein kinase-like (PK-like) 592 918 IPR011009 -
Phco7g02494 942 Gene3D Ribonuclease Inhibitor 243 549 IPR032675 -
Phco7g02494 942 SUPERFAMILY L domain-like 284 539 - -
Phco7g02494 942 Pfam Leucine rich repeat N-terminal domain 9 48 IPR013210 -
Phco7g02494 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Phco7g02494 942 FunFam Nuclear pore complex protein NUP107 8 175 - -
Phco7g02494 942 ProSiteProfiles Protein kinase domain profile. 619 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02494 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 247 555 - -
Phco7g02494 942 SMART LRR_typ_2 99 123 IPR003591 -
Phco7g02494 942 SMART LRR_typ_2 476 499 IPR003591 -
Phco7g02494 942 SMART LRR_typ_2 355 379 IPR003591 -
Phco7g02494 942 SMART LRR_typ_2 428 452 IPR003591 -
Phco7g02494 942 SMART LRR_typ_2 307 330 IPR003591 -
Phco7g02494 942 Pfam Protein kinase domain 621 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02494 Phco-Chr7 43785263 43793149 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco7g02494 Pkinase 6.7e-42 CL0016