Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02487 ATGCAAGGGACTTTTATGATCTCCATATATACAAAGGACAGGGATATGGACGAAGTTGATCTATGTCCATGTCCCACAGGGCACAGAGTAACGATTAAAGTATTTGAATTAGCCATGACGGTACATACAGTTGTCCCTCTCCCTTGTGCTATTCAAGTTCCAATGGAGATTTTCAACTGCTTCTACATCAATCTTCTTGCTACCTTCATGTTATCAGCAGTTCTAGCAATCGACCCCTACTCAGAAGCACTCCTCAGCCTAAAACATGAACTTCTAGATGATGATAACAGCTTGCGCGACTGGGTGGTACCCTCAGGAGGAAAATTAACTGGGAAATACTTTGCGTGTTCTTGGTCAGGTGTCAAGTGTAACAATGATTCAACCACTGTAACTTCTATAGATCTTTCCATGAAGAAACTGGGAGGTGTGTTGTCAGGGAAGCAATTCAGCATCTTCACAAACCTCACTAATCTCAACCTCAGCTACAATTTCTTCTCAGGACAGCTTCCAGCGGAGATTTTCAACCTCACTAGCCTAACAAGCTTGGACATCAGCAGAAACAACTTTTCTGGTTCCTTCCCCGGTGGAATCACCAGGCTCCAAAATTTGGTTGTGCTTGATGCCTTTAGCAACAGTTTTTCAGGGTCGTTGCCTGCTGAATTTTCACAGCTAGCAAACCTTAAAGTTCTCAATCTAGCTGGGAGCTACTTCAGAAATTCAATTCCATCTGAATATGGTTCTTTTAAAAGCCTTCAGTTTCTTCATCTTGCCGGAAATTCTCTTTCAGGAAGTATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCATATGGAGATTGGGTACAACCTATACCAGAGTTTTATACCACCCGAACTAGGTAACATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTATCAGGTCATATACCAAAGCAACTCTCCAACCTCACCAGTTTGCAATCACTTTTCCTGTTCAGAAACCAGCTTACAGGAACAGTGCCAAGTGAGCTCAGTAACATTCAATCCCTGGCAGATTTAGATCTCTCTGATAACTTCCTCTCAGGGTCCATTCCCGAAAGCTTCTCAGCCCTGGAGAACCTAAGACTACTCAGCCTCATGTACAATGACATGAGTGGCACTGTTCCTGAAGGAATTGCGCAACTCAAATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGGTCACTTCCGCAGAGCTTAGGGAGGAATTCCAAACTCAAGTGGGTGGATGCTTCCACAAACAATTTAGTTGGCAGCATACCACCAGACATCTGTGTGAGTGGAGTACTATTTAAGCTAATACTGTTTTCAAACAACTTCACAGGTCATCTCTCATCAATCTCCAATTGTTCTTCACTCGTTCGCCTTCGCCTAGAAGATAACTCATTTTCAGGAGAAATCACTTTGAAATTCACCCATCTTCCTGATATCTTATACGTTGATCTCTCCAGGAACAACTTTGTTGGTGGCATTCCCTCGGATATTTCTCAAGCCACTCAACTCGAGTATTTTAATGTCTCTTATAATCCGCAATTAGGAGGTACCATCCCTGCACAAACATGGTCTTTGCCCCAACTTCAAAATTTTTCAGCATCTTCTTGTGCTATTTCTGGTGGTCTTCCCCTATTTGAGTCCTGCAAATCAATTTCAGTTATTGATCTAGATAGCAATAACTTATCTGGAATCATCCCAAACAGTGCTTCCAAATGTCGAGTTCTTGAGAAAATCAACCTATCCAACAATAACTTAACAGGTCATATACCTGATGAGCTTGCAAGTATTCCGGTTCTTGTTGTGGTGGACCTATCAAACAACAAGTTCAATGGCCTCATACCTGCTGAGTTTGGTAGTTGTTCAAGTTTACAACTTCTGAATGTGTCTTTTAACAATATCTCTGGTTCAATACCCACAGGAAAGACATTCAAATTGATGGGAAAAAGTGCATTTATCGGAAATTCAGAGCTATGTGGAGCACCCCTGAGATCATGTCCTGATTCAGTTGGAATATTGGGCAGAAAAGGCACGTGGAAGATTACACATATTGTGCTACTCTCTGTAGGGTTGCTGATAGTTCTTCTAGGACTTACGTTTGGAATATTTTATTTGAGAAGGGGGATAAAAAGTCAATGGAAGATGGTCTCATACGTTGGTCTCCCTCAATTCACAGCAAATGATGTTTTGACGAGCCTCACTGCTGCAAAACCAACAGAAGTTACATCACCATCACCAGCAGTTGCAAAGGCTGTTCTGCCTACAGGAATAACAGTTCTGGTCAAGAAGATAGAATGGGAAGCTAGGAGCATCAAGGTTGTGTCAGAATTTATAATGAGACTGGGAAATTCAAGGCACAAGAATTTAATCAGACTACTGGGGTTTTGCCACAACCAGCATTTAGTCTATCTTTTGTATGATTACTTGCCCAATGGGAATTTGGCTGAGAAAATGAAAATGAAATGGGATTGGTCAGCAAAATTCAGAACTGTGGTTGGAATAGCAAGGGGACTATGCTTTCTTCACCATGAATGTTACCCAGCAATACCCCACGGAAACTTGAAGCCTAGCAATGTTGTATTTGACGAAAATATGGAACCCCATTTGGCAGAATTTGGGTTCAAACAGGTTTTTAGGTTGAGCAAAGACCCATCACCCACCATAACTAAGTGGGAAGCAGAATACGATGAGACCACAAAAGAAGAACTGCGCGTGGATATCTACAATTTTGGGGAGATGATTCTAGAAATTTTAAGTGGCGGAAGGTTGACAAATGCAGGAGCCAGCATACACAGCAAACCACGGGAGGATCTCTTGAGAGAAATCTATAATGAGAATGAAGCAAGCTCTGCAAGTTCATTGCATGAGATTAAACTGGTTCTTGAGGTTGCTATGTTTTGCACCAGAAGCAGGTCATCAGATCAGCCATCAATGGAAGATGTTCTCAAGCATCTGTCAGGGCTAAAGCATACAGATGATGGCAGAACTTCGAAAGAAGGGCAATAA 3036 0.4209 MQGTFMISIYTKDRDMDEVDLCPCPTGHRVTIKVFELAMTVHTVVPLPCAIQVPMEIFNCFYINLLATFMLSAVLAIDPYSEALLSLKHELLDDDNSLRDWVVPSGGKLTGKYFACSWSGVKCNNDSTTVTSIDLSMKKLGGVLSGKQFSIFTNLTNLNLSYNFFSGQLPAEIFNLTSLTSLDISRNNFSGSFPGGITRLQNLVVLDAFSNSFSGSLPAEFSQLANLKVLNLAGSYFRNSIPSEYGSFKSLQFLHLAGNSLSGSIPPELGNLKTVTHMEIGYNLYQSFIPPELGNMSQLQYLDIAGANLSGHIPKQLSNLTSLQSLFLFRNQLTGTVPSELSNIQSLADLDLSDNFLSGSIPESFSALENLRLLSLMYNDMSGTVPEGIAQLKSLETLLIWNNRFSGSLPQSLGRNSKLKWVDASTNNLVGSIPPDICVSGVLFKLILFSNNFTGHLSSISNCSSLVRLRLEDNSFSGEITLKFTHLPDILYVDLSRNNFVGGIPSDISQATQLEYFNVSYNPQLGGTIPAQTWSLPQLQNFSASSCAISGGLPLFESCKSISVIDLDSNNLSGIIPNSASKCRVLEKINLSNNNLTGHIPDELASIPVLVVVDLSNNKFNGLIPAEFGSCSSLQLLNVSFNNISGSIPTGKTFKLMGKSAFIGNSELCGAPLRSCPDSVGILGRKGTWKITHIVLLSVGLLIVLLGLTFGIFYLRRGIKSQWKMVSYVGLPQFTANDVLTSLTAAKPTEVTSPSPAVAKAVLPTGITVLVKKIEWEARSIKVVSEFIMRLGNSRHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMKMKWDWSAKFRTVVGIARGLCFLHHECYPAIPHGNLKPSNVVFDENMEPHLAEFGFKQVFRLSKDPSPTITKWEAEYDETTKEELRVDIYNFGEMILEILSGGRLTNAGASIHSKPREDLLREIYNENEASSASSLHEIKLVLEVAMFCTRSRSSDQPSMEDVLKHLSGLKHTDDGRTSKEGQ 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02487 1011 Gene3D Ribonuclease Inhibitor 558 676 IPR032675 -
Phco7g02487 1011 Gene3D Ribonuclease Inhibitor 336 439 IPR032675 -
Phco7g02487 1011 MobiDBLite consensus disorder prediction 993 1011 - -
Phco7g02487 1011 FunFam Leucine-rich repeat receptor-like protein kinase TDR 734 818 - -
Phco7g02487 1011 ProSiteProfiles Protein kinase domain profile. 723 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02487 1011 FunFam Leucine-rich repeat receptor-like protein kinase TDR 819 1003 - -
Phco7g02487 1011 SUPERFAMILY Protein kinase-like (PK-like) 758 999 IPR011009 -
Phco7g02487 1011 Gene3D Transferase(Phosphotransferase) domain 1 817 1010 - -
Phco7g02487 1011 SMART LRR_typ_2 248 272 IPR003591 -
Phco7g02487 1011 SMART LRR_typ_2 152 176 IPR003591 -
Phco7g02487 1011 SMART LRR_typ_2 392 416 IPR003591 -
Phco7g02487 1011 SMART LRR_typ_2 320 344 IPR003591 -
Phco7g02487 1011 SMART LRR_typ_2 607 630 IPR003591 -
Phco7g02487 1011 FunFam Leucine-rich repeat receptor-like protein kinase TDR 242 346 - -
Phco7g02487 1011 FunFam Leucine-rich repeat receptor-like protein kinase 80 241 - -
Phco7g02487 1011 Pfam Leucine rich repeat 346 404 IPR001611 GO:0005515
Phco7g02487 1011 Pfam Leucine rich repeat 586 644 IPR001611 GO:0005515
Phco7g02487 1011 Gene3D Phosphorylase Kinase; domain 1 754 816 - -
Phco7g02487 1011 MobiDBLite consensus disorder prediction 983 1011 - -
Phco7g02487 1011 Pfam Leucine rich repeat N-terminal domain 82 124 IPR013210 -
Phco7g02487 1011 SUPERFAMILY L domain-like 114 434 - -
Phco7g02487 1011 Gene3D Ribonuclease Inhibitor 79 234 IPR032675 -
Phco7g02487 1011 FunFam Leucine-rich repeat receptor-like protein kinase TDR 365 678 - -
Phco7g02487 1011 Pfam Protein tyrosine and serine/threonine kinase 765 995 IPR001245 GO:0004672|GO:0006468
Phco7g02487 1011 Gene3D Ribonuclease Inhibitor 440 555 IPR032675 -
Phco7g02487 1011 Gene3D Ribonuclease Inhibitor 235 335 IPR032675 -
Phco7g02487 1011 PANTHER UNNAMED PRODUCT 223 934 - -
Phco7g02487 1011 SUPERFAMILY RNI-like 337 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02487 Phco-Chr7 43690460 43694232 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco7g02487 PK_Tyr_Ser-Thr 6e-16 CL0016