Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02471 ATGCAGCCCTGTAGCAGAGAAATGCAAGGAATCAACGCACTCTTCAACTCTTCCCAAATCTCACTCCAGGACCTCCACACCACAACCAACCAGATCCAAAATTCACACATGAACAACCACCACCACCACCACCACCAACAGCAACCACTCCAACACCAACTCCCTCACTTCGACCCAACCTCTCAGGATGACTTTCTCGACCAAATGTTCTCCTCCTGGCCCGACCTCAACCCAAACAAGCCCTTGTGGGACCCCAATAACCTCTCCGACGAAACCACTCCCTCCAACAACGACCATAACAATAATAATACCAATAACAATGTCGCTTTCCCCTACGACGAACCCTCCACTTTGGCCTCCAAGTTCCGCGACCACCAGATCAGCGCCTCCACAACCAAAAACGCCGCCGCAGCTCTCATGCTCCAACACCAACTCCTCATGTCCAGAGACTCTCCGCTCCTTCACATGCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCCTTCAAATCCCCCAATCCCGGTGGTGACACTTCAGTGCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCGCAGGTCAAGCCTCCAACCAGGCTCAGCATTTTCAACATCCTCAGGGAAGTTCGAATCCGATACAGGGGCAAAATTTTGGTGCGCCGGGTGCTGGGGCTGCGACGAACCAAGCTCCGGCGAGTGGCGCGCCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAGGCCACGGACCCACACAGCATCGCTGAACGGTTAAGAAGGGAGAGAATCGCAGAGAGAATGAAAGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCGTCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCCCTTGTTGCTGATATGTCTTCTGAGGGTGGCGGTGACTGCATCCAAGCCAACGGCGGCGTGGCCCTCGCGCCCAACTCGAACAGCAACAACAACCAAACGACAGCGTCAGCCTCAAATGACAGCCTGACCATGACGGAGCACCAGGTAGCGAAGCTGATGGAGGAAGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTTGCCTCATGCCCATTTCCCTTGCCACTGCCATCTCCACTGCCACATGTCACACCAGGAACCCCTTGATCAGCGCCGCCTCCGGCAGCACCCAGATTCCCACCAACGCCACCCCCGGCACACACGTCAACCCCGCCGTCGCGTCCAACGGCGAAGGCCCGTCCTCTCCGAGCATGTCCGTGTTGACAGTGCAGTCTGCCGTGGTGGGCAACGACGGCGCCGTCAAGGATGCTGCCTCCGTTTCGAAGCCGTGA 1422 0.5689 MQPCSREMQGINALFNSSQISLQDLHTTTNQIQNSHMNNHHHHHHQQQPLQHQLPHFDPTSQDDFLDQMFSSWPDLNPNKPLWDPNNLSDETTPSNNDHNNNNTNNNVAFPYDEPSTLASKFRDHQISASTTKNAAAALMLQHQLLMSRDSPLLHMPLSLPQNDVVDASSFKSPNPGGDTSVQALYNGFAGSLHGAGQASNQAQHFQHPQGSSNPIQGQNFGAPGAGAATNQAPASGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGGVALAPNSNSNNNQTTASASNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLISAASGSTQIPTNATPGTHVNPAVASNGEGPSSPSMSVLTVQSAVVGNDGAVKDAASVSKP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02471 473 FunFam Transcription factor bHLH66 249 314 - -
Phco7g02471 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 312 IPR036638 GO:0046983
Phco7g02471 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Phco7g02471 473 MobiDBLite consensus disorder prediction 196 258 - -
Phco7g02471 473 MobiDBLite consensus disorder prediction 196 226 - -
Phco7g02471 473 MobiDBLite consensus disorder prediction 35 108 - -
Phco7g02471 473 Gene3D - 247 309 IPR036638 GO:0046983
Phco7g02471 473 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 401 - -
Phco7g02471 473 SMART finulus 258 307 IPR011598 GO:0046983
Phco7g02471 473 MobiDBLite consensus disorder prediction 82 108 - -
Phco7g02471 473 Pfam Helix-loop-helix DNA-binding domain 257 302 IPR011598 GO:0046983
Phco7g02471 473 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02471 Phco-Chr7 43467133 43470342 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g02471 HLH 1.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02471 7 43467133 43470342 Phco7g02471 7 43467133 43470342 ECH