Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02466 | ATGGGGTCACGACGACGACGTTTGGTCTCGGGTTTTAAAGGACATAGTTCCAGCTTCCTCATTCCCATGGAATTGAAAAAGGGAAAGCTTGTCAGGTTCTACTCGGATGGCAAAAAGCATAAAAAACCAGTGTGGGGAGCAACTGAGCCTCCAGCGCTCAAACCTAGCAATTTGCTGCCACTGGGGAAGAATAGAATTGGTGAACCATTTAGAATTAGCGGATCCAAGGTATTCCCGGAGGATCACGAGCCGTGGCGTAAAAGAATACTTGACCCTGGTAGTGAGATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCATGCTTGGTGGCTCTTTTTGTTGATCCGTTATACTTTTATTTGCCTAGTGTGATAGAAAATACAGGGTCTTCGTGTGTAAGGACAGACTTAACATTGCGCATCGTTGTGACCTTTCTGCGCACTATTGCTGACCTCTTTTACCTGCTGCACCTGATAATTAAGTTCAGGACAGCATATGTGGCACCAAGCTCACGGGTATTTGGCAGGGGGGAACTTGTCATGGACCCAAAGAAGATTGCAAGAAGATATATCAGATCTGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAGATGGTCATCTGGTTTATTATCCCAGCAACAAGAAGCCCTCAAACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTCCAGTATGTTCCAAGATTATATTTGATTTTTCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCTTGGGCAGGAGCTGCATATAACTTGCTACTGTATATGTTAGCTAGCCATGTTTTAGGGGCATCTTGGTATCTTCTATCTGTGGACCGATACACTACTTGTTTGAAATCCTTTTGTAAAAAGGAACAAAATCCTGAAAATTGCTTTGGCTACCTGGACTGCAGTTCTTTGAATACCGAGCTGCGCAAGATATGGGCGAATAGTACAAATGTGTTTAGCAGCTGTGATCCCAGTAATAAGGATATCAATTTCAAGTTTGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTTTCTTCAGTCTTTATTCCAAAATACCTTTATTGTTTATGGTGGGGATTGCAGCAATTAAGTTCTTATGGGCAGAACCTAGAAACTAGCATGTTTATTGGAGAAACATCATTCGCTATTGTCATTGCCATCTTAGGTCTTGTATTATTTTCCCATTTGATCGGGAACATGCAGACATATTTGCAATCTATTACTATACGGCTTGAGGAGTGGAGACTTAAGCGAAGAGACACAGAAGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTTAGAAGATTTGTTCAATATAAATGGCTTGCTACTCGCGGAGTTGATGAGGAAACCATTCTACGTGCATTACCTGCTGATCTTAGCCGTGATATTCAAAGGCACCTGTGCTTAGACCTTGTTAGAAGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCCGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTGTACTACAAATGGTGGCCGGACTGGTTTCTTCAACTCAATTATATTGAGACCTGGAGATTTTTGTGGCGAGGAACTACTTTCTTGGGCATTACTCCCAAAATCAACCATTAATTTGCCTTCTTCAACCAGAACAGTTAAAGCCCTTAGTGAGGTTGAGGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTAGCCAATCAATTTAGGCGGCTTCACAGTAAGAAACTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGATACAAGAAAAGGATATCTATGAAAGACATCGGTTTGAGGGAATCCATTCCTTTAGATGAGACAGTAGCTAGCGAGAGAGAACATGAGGACTATTCTGCTAGTTCAAAGACAGCTCAGGCTAAATTGAATCTTGGGGCAACAATTCTTGCTTCCAGATTTGCAGCTAATACACGAAGAGGAGCCTTGAAGATTAAAGATGACATGCCCAAGTTACCGAAGCCAGAAGAACCCGACTTTTCCACTGAAGCCGATGATGATTAG | 2202 | 0.426 | MGSRRRRLVSGFKGHSSSFLIPMELKKGKLVRFYSDGKKHKKPVWGATEPPALKPSNLLPLGKNRIGEPFRISGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENTGSSCVRTDLTLRIVVTFLRTIADLFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCLKSFCKKEQNPENCFGYLDCSSLNTELRKIWANSTNVFSSCDPSNKDINFKFGIFENAVKKHVVSSVFIPKYLYCLWWGLQQLSSYGQNLETSMFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLSRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSCTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRISMKDIGLRESIPLDETVASEREHEDYSASSKTAQAKLNLGATILASRFAANTRRGALKIKDDMPKLPKPEEPDFSTEADDD | 733 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02466 | 733 | Gene3D | Jelly Rolls | 496 | 616 | IPR014710 | - | |
| Phco7g02466 | 733 | Gene3D | Helix hairpin bin | 426 | 489 | - | - | |
| Phco7g02466 | 733 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 498 | 628 | IPR000595 | - | |
| Phco7g02466 | 733 | SUPERFAMILY | cAMP-binding domain-like | 428 | 620 | IPR018490 | - | |
| Phco7g02466 | 733 | Pfam | Cyclic nucleotide-binding domain | 521 | 609 | IPR000595 | - | |
| Phco7g02466 | 733 | FunFam | Cyclic nucleotide-gated ion channel 1 | 425 | 489 | - | - | |
| Phco7g02466 | 733 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 81 | 726 | - | - | |
| Phco7g02466 | 733 | MobiDBLite | consensus disorder prediction | 711 | 733 | - | - | |
| Phco7g02466 | 733 | CDD | CAP_ED | 498 | 629 | IPR000595 | - | |
| Phco7g02466 | 733 | MobiDBLite | consensus disorder prediction | 711 | 725 | - | - | |
| Phco7g02466 | 733 | Gene3D | - | 103 | 423 | - | - | |
| Phco7g02466 | 733 | SMART | cnmp_10 | 498 | 629 | IPR000595 | - | |
| Phco7g02466 | 733 | Pfam | Ion transport protein | 100 | 424 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Phco7g02466 | 733 | SUPERFAMILY | Voltage-gated potassium channels | 94 | 420 | - | - | |
| Phco7g02466 | 733 | FunFam | Cyclic nucleotide-gated ion channel 1 | 496 | 614 | - | - | |
| Phco7g02466 | 733 | PRINTS | EAG/ELK/ERG potassium channel family signature | 158 | 167 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Phco7g02466 | 733 | PRINTS | EAG/ELK/ERG potassium channel family signature | 275 | 285 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Phco7g02466 | 733 | PRINTS | EAG/ELK/ERG potassium channel family signature | 393 | 404 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Phco7g02466 | 733 | PRINTS | EAG/ELK/ERG potassium channel family signature | 411 | 420 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Phco7g02466 | 733 | PRINTS | EAG/ELK/ERG potassium channel family signature | 461 | 468 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02466 | Phco-Chr7 | 43357580 | 43363862 | Dispersed/Wgd |