Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02463 | ATGGCCAAAGAGGTGTACGATGAAATGCTTCACACGTATGATGTTACTCCAGACAGTTGTACATACAATGTTTTGATCAGAGGGTTTTGCAAGAACTCAAAGGTCGAGGAAGGGTTTCGGTTCTGTAATGAGATGGCTAGTTTTAATTGTGATAAGGATGTTGTGAGACGCTTGTTGATGGTTTGTGTAGAGCGGGGAAGTATCTCGTCACAACAACTATTTTCAAATCTCCGTTTCATTTCCGTCTCCACCTTCAATTCCCACCTTAGGTACTTTTGTTCTGACCACCCAGAATCTCCAAACGCAAGGCTCAGATCACGAAATGCAAGTAAAACCGCCAAAAACATGGCCGATCTTATCAATTCCAAACCATGGTCAAACGCGTTAGTCTCTCCTCTGCCCACCCCTCTCTCCAAAACGACGGTGCTCCGAACACTTCGCCTCATCAAGGACCCTTCCAAAGCCCTCCACTTTTTTAAGTGGGCTCAGCAAAGTGGTTTTCCCCACACAGCTCAGTCCTACTTCATCATGCTACAAATTCTGGGTCGCCATAGGAACCTAAATGTGGCCCGAAACTTGCTTTTTTCCATCGAGAAAAAGTCCAACGGTACCGTCAAGCTTGGGGACAGGTTCTTCAATACCCTCATCAGAAGCTACGCTGAAGCGGGCCTCTTCAAAGAGTCCTTGAAGCTTTTTCAAACCATGAAGTCCATTGCTGTGTCCCCATCCGTGGTTACCTTCAATTCTGTTTTGTCTATTTTGCTTAAAAGGGGTCGCACCAATATGGCCAAAGAGGTGTATGATGAAATGCTTCACACGTATGGTATTACTCCAGACATTTGTACATACAATGTTTTGATTAGAGGATTTTGCAAGAACTCAATGGTCGATGAAGGGTTTCGGTTCTTCAATGAGATGGCTCGTTTTAATTGTGATCCAGATATTGTCACGTATAACACGCTTGTTGATGGTTTGTGTAGAGCGGGGAAGGTCAGAATTGCTCGGAATTTAGTAAATGCTATGACCAAGAAATGTGAGGGTTTGAATCCTAATGTTGTTACTTATACCACTTTGATCCGAGGCTATTGTATGAAGCAAGAAGTTGATGAGGCATTGGTTGTTCTTGAAGAGATGAGTGGCCGGGGCATTGAGCCGAACATGATTACCTATAATACTTTGATAAAAGGGCTTTGTGAGGCACGTAAGTTGGACAAGATGAAAGATGTTTTGAAATGGATGAAAGACAATGGAGGTTTTAGCCCTGATACATTTACCTTCAATACGATTATTCACTCGCATTGTTGTGCAGGAAATCTGGATGAAGCATTGAAGGTGTTTGAAAGCATGAAGAAATTTCAGGTCCGTATGGATTCAGCCTCGTACAGCACTCTGATACGTAGTTTGTGTCAGAAAGGGGACTACGATATGGCAGAGTTGCTATTTGATGAGTTATTTCAGAAGGAAATTCTTTTGTGTAATTTTGGCTCCAAGCCACTTGTTGCTGCTTACAGTCCTCTTTTTCAGTATTTGTGTGAACATGGGAAGAGTAAGAAGGCTGAGAGGGTGATGAGACAGTTAATGAAAAGGGGCACACAAGATGCCCAGTCATACAAAACATTGATTATGGGGCATTGTAAAGAAGGTGCATATGAAAGTGGATATGAGCTTTTAGTGTGGATGCTAAGAAGAGACTTTCTTCCTGATGTTGATATATATGATTATTTGATTGATGGTTTTCTTTTAAAGAATAAGCCTCTGCTTGCAAAGGAGACACTAGAGAAAATGCTTAAGAGCTCCTATCAACCTAAAACAGACTCCTGGCATTCTATACTGGCAAAACTTTTGGAAAAGGGTTGTGCTCATGAGTCAGCCTGTGTTATTATGATGATGCTGGAGAAAAATGTTAGACAGAATATAAACATGTCAACTGAGAGTTTAAAGCTACTTTTTGGATGTGGACAGCATGAAAGAGCATTTGAGATTATTGATTTGCTTTATAAGAATGGATACCGGGTTAAAATAGAAGAAGTGGTTCAATTTCTTTTTGAGAGAGGAAAGCTGTCAGAAGCATGCAAACTGTTGCTTTTTAGTTTGGAAATTCATCAGAATGTCAATATTGATTTGTGTAATGCAATTGTTCTGAATCTTTGTAAAACTAACAAGGTCTCCGATGCATTTAATTTATGCTATGGATTGGTGGAGAACGGTTTATGTCAGGAATTGACATGTCTAAATGATCTAATGGCTGCTTTAGAGGAAAGGGGAAGAAGAGAGGAAGCAGTATTTATATCAAAGAGATTACCAAAACTGGAGAATTCAGATGGACCAAAGGGAAATCATAGCTCTAAGAAGTCCAGGGCTATTAAAGTCTGA | 2373 | 0.4075 | MAKEVYDEMLHTYDVTPDSCTYNVLIRGFCKNSKVEEGFRFCNEMASFNCDKDVVRRLLMVCVERGSISSQQLFSNLRFISVSTFNSHLRYFCSDHPESPNARLRSRNASKTAKNMADLINSKPWSNALVSPLPTPLSKTTVLRTLRLIKDPSKALHFFKWAQQSGFPHTAQSYFIMLQILGRHRNLNVARNLLFSIEKKSNGTVKLGDRFFNTLIRSYAEAGLFKESLKLFQTMKSIAVSPSVVTFNSVLSILLKRGRTNMAKEVYDEMLHTYGITPDICTYNVLIRGFCKNSMVDEGFRFFNEMARFNCDPDIVTYNTLVDGLCRAGKVRIARNLVNAMTKKCEGLNPNVVTYTTLIRGYCMKQEVDEALVVLEEMSGRGIEPNMITYNTLIKGLCEARKLDKMKDVLKWMKDNGGFSPDTFTFNTIIHSHCCAGNLDEALKVFESMKKFQVRMDSASYSTLIRSLCQKGDYDMAELLFDELFQKEILLCNFGSKPLVAAYSPLFQYLCEHGKSKKAERVMRQLMKRGTQDAQSYKTLIMGHCKEGAYESGYELLVWMLRRDFLPDVDIYDYLIDGFLLKNKPLLAKETLEKMLKSSYQPKTDSWHSILAKLLEKGCAHESACVIMMMLEKNVRQNINMSTESLKLLFGCGQHERAFEIIDLLYKNGYRVKIEEVVQFLFERGKLSEACKLLLFSLEIHQNVNIDLCNAIVLNLCKTNKVSDAFNLCYGLVENGLCQELTCLNDLMAALEERGRREEAVFISKRLPKLENSDGPKGNHSSKKSRAIKV | 790 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02463 | 790 | Gene3D | Tetratricopeptide repeat domain | 1 | 141 | IPR011990 | GO:0005515 | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 208 | 242 | IPR002885 | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 351 | 385 | IPR002885 | - | |
| Phco7g02463 | 790 | Pfam | PPR repeat | 15 | 45 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 424 | 457 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 212 | 237 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 245 | 280 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 388 | 423 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 353 | 386 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 460 | 484 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 281 | 315 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 316 | 351 | IPR002885 | - | |
| Phco7g02463 | 790 | NCBIfam | pentatricopeptide repeat | 20 | 51 | IPR002885 | - | |
| Phco7g02463 | 790 | Gene3D | Tetratricopeptide repeat domain | 414 | 490 | IPR011990 | GO:0005515 | |
| Phco7g02463 | 790 | Gene3D | Tetratricopeptide repeat domain | 273 | 342 | IPR011990 | GO:0005515 | |
| Phco7g02463 | 790 | Gene3D | Tetratricopeptide repeat domain | 343 | 413 | IPR011990 | GO:0005515 | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 457 | 491 | IPR002885 | - | |
| Phco7g02463 | 790 | Pfam | PPR repeat family | 421 | 470 | IPR002885 | - | |
| Phco7g02463 | 790 | Pfam | PPR repeat family | 350 | 398 | IPR002885 | - | |
| Phco7g02463 | 790 | Pfam | PPR repeat family | 278 | 327 | IPR002885 | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 422 | 456 | IPR002885 | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 533 | 567 | IPR002885 | - | |
| Phco7g02463 | 790 | Pfam | PPR repeat | 536 | 558 | IPR002885 | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 568 | 602 | IPR002885 | - | |
| Phco7g02463 | 790 | Pfam | Pentatricopeptide repeat domain | 212 | 254 | IPR002885 | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 243 | 278 | IPR002885 | - | |
| Phco7g02463 | 790 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 533 | 761 | - | - | |
| Phco7g02463 | 790 | Gene3D | Tetratricopeptide repeat domain | 491 | 624 | IPR011990 | GO:0005515 | |
| Phco7g02463 | 790 | Gene3D | Tetratricopeptide repeat domain | 625 | 785 | IPR011990 | GO:0005515 | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 314 | 344 | IPR002885 | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 386 | 420 | IPR002885 | - | |
| Phco7g02463 | 790 | MobiDBLite | consensus disorder prediction | 771 | 790 | - | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | IPR002885 | - | |
| Phco7g02463 | 790 | Gene3D | Tetratricopeptide repeat domain | 142 | 272 | IPR011990 | GO:0005515 | |
| Phco7g02463 | 790 | SUPERFAMILY | HCP-like | 428 | 600 | - | - | |
| Phco7g02463 | 790 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 18 | 52 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02463 | Phco-Chr7 | 43273774 | 43276561 | Tandem |