Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02429 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTAACCTTCTCAAAGAGAAGGTCTGGTTTGCTGAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTGGCCCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCATGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCTTGTTGTAAGTGATCAACCACAAAGTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTTCTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGATGGTCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTAATAAAAAGGATAAGGCCCTACAAGAACAAAACAACACTCTTGCAAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCAGAACAACAAGCACAGTTTGAGCGACAAGCTGATGAAATGGATCTAACCTCCTCTGTCCTTGTACCTCAACCATTGGAGACATCTCATATTAGAGGGTCCTCACAAGTAATAGTTGATGGAGGAGATAATGAAGGAAGTGCAACTCCAAGTAGAGCAAATGCCATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAG 741 0.4157 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVVSDQPQSENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKDKALQEQNNTLAKKIKEKEKALAEQQAQFERQADEMDLTSSVLVPQPLETSHIRGSSQVIVDGGDNEGSATPSRANAILPPWMLRPTNE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02429 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco7g02429 246 Coils Coil 125 145 - -
Phco7g02429 246 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Phco7g02429 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco7g02429 246 Coils Coil 151 192 - -
Phco7g02429 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g02429 246 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Phco7g02429 246 Coils Coil 88 108 - -
Phco7g02429 246 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g02429 246 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Phco7g02429 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco7g02429 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco7g02429 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco7g02429 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco7g02429 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phco7g02429 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Phco7g02429 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02429 Phco-Chr7 42421284 42430041 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco7g02429 K-box 1.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01429 8 14805893 14810247 Phco7g02429 7 42421284 42430041 ECH
Phco3g02967 3 56021032 56026714 Phco7g02429 7 42421284 42430041 ECH
Phco7g02429 7 42421284 42430041 Phco7g02429 7 42421284 42430041 ECH
Phco8g01430 8 14815593 14821307 Phco7g02429 7 42421284 42430041 PCT