Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02398 ATGTTAAAGTACAACTCAAACAAAAGCTATAAGAGTGAAGAAAAGGAGCCAAACCAAGCACGTCAAGAACACCAAGATAGAGAAAGTATTTTGTTCGTTCGGCTCTCGCAAACAGTAGAAGGACCAAAAACAACAGAAGCAGTCATGGCCGAAGCAGAAGACAACGATACCAGCTCGCCCGAGCGCGAGGACCAAATCAAAATTAACAAGAAGAAGCTTCGCAAGAGAAAAAGACCTAACAAGAGAGAGCATAAACAAGAGGAGAAGAACGATGTGAAGATTGATAACACGCTAACACAGGCCGAATATGAAGAAGAAGAAAAAGAAGAGACACAGGTGAACACTAACGATTCAACCGGAATCATGAGTTCCGATTCTTTCTCCTCTCTCAGCTTGTCCGAACCTACTTCCAAAGCCATTGAGGACATGGGCTTCCACCTTATGACTCAGATTCAAGCAAGGGCGATTCCGCCGCTGCTGATCGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGCTGGAGTTGCTGTACAACGCCCAGTTCACGCCGCTCAACGGAACGGGTGTTGTTGTGATATGTCCGACGAGGGAGCTCGCGATTCAGACGCATGCCGTGGCGAAGGAACTGCTGAAGTACCATTCACTAACGCTCGGGTTGGTGATTGGGGGTTCCGGGCGAAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTGAACCTATTGGTGGCGACGCCGGGTAGGCTTCTCGATCATCTTCAAAACACGAAAGGGTTCATATATAAAAACTTGGAGTGCCTCATGATTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTGCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGATCTTGCTCGCTTATCTTTTCAGACAACTCCTATCTATATTAATGTAGATGATGGGAGAAAAAAGGTGACAAATGAAGGATTACAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGATTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAGAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAACAACATGCCCGTACTTCTACGTTCTTCAACTACTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGAAATTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGCATTTGATCATAAGAAGCTGGCAAATGTACAATCTCACCTGGAGAAGTTGGTGACTGGCATCTATCATTTGAATAATATGGCTAAAGACGCATATCGGTCATTTATATTAGCATATAATGCACATTCTATGAAAGATATATTCAATGTTCACCGCCTAGATTTACTGGCTGTTGCTACTTCATTTTGTTTTCCCAACCCACCGAAGGTGAATCTGAACATAGATAGCAGTGCTTCGAAGCATAGAAAGAAAGTACGCAAAGTGGAAGGGAAGAGATGA 1770 0.4401 MLKYNSNKSYKSEEKEPNQARQEHQDRESILFVRLSQTVEGPKTTEAVMAEAEDNDTSSPEREDQIKINKKKLRKRKRPNKREHKQEEKNDVKIDNTLTQAEYEEEEKEETQVNTNDSTGIMSSDSFSSLSLSEPTSKAIEDMGFHLMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLVPALELLYNAQFTPLNGTGVVVICPTRELAIQTHAVAKELLKYHSLTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLECLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYINVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTSTFFNYCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELKFLHYLKAAKVPVKEYAFDHKKLANVQSHLEKLVTGIYHLNNMAKDAYRSFILAYNAHSMKDIFNVHRLDLLAVATSFCFPNPPKVNLNIDSSASKHRKKVRKVEGKR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02398 589 PANTHER RNA HELICASE 81 506 - -
Phco7g02398 589 MobiDBLite consensus disorder prediction 114 128 - -
Phco7g02398 589 FunFam RNA helicase 342 572 - -
Phco7g02398 589 CDD DEADc_DDX18 136 333 IPR044773 GO:0003724|GO:0005524
Phco7g02398 589 Gene3D - 342 582 IPR027417 -
Phco7g02398 589 MobiDBLite consensus disorder prediction 1 128 - -
Phco7g02398 589 Pfam Domain of unknown function (DUF4217) 507 567 IPR025313 -
Phco7g02398 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 331 IPR014001 -
Phco7g02398 589 SMART ultradead3 144 349 IPR014001 -
Phco7g02398 589 CDD SF2_C_DEAD 346 476 - -
Phco7g02398 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 308 IPR027417 -
Phco7g02398 589 MobiDBLite consensus disorder prediction 8 30 - -
Phco7g02398 589 MobiDBLite consensus disorder prediction 47 68 - -
Phco7g02398 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 515 IPR001650 -
Phco7g02398 589 Pfam DEAD/DEAH box helicase 149 320 IPR011545 GO:0003676|GO:0005524
Phco7g02398 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 487 IPR027417 -
Phco7g02398 589 SMART DUF4217_3 506 569 IPR025313 -
Phco7g02398 589 SMART helicmild6 385 466 IPR001650 -
Phco7g02398 589 Gene3D - 65 335 IPR027417 -
Phco7g02398 589 MobiDBLite consensus disorder prediction 83 101 - -
Phco7g02398 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Phco7g02398 589 Pfam Helicase conserved C-terminal domain 361 465 IPR001650 -
Phco7g02398 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02398 Phco-Chr7 41898616 41906108 Dispersed/Wgd