Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02370 ATGAATTTCCTCCTTTGTCTCCACAATGGTACCAAGTTGTCACATCATCTTAGTGAGCGATGGGGGCACAATTGGGATGGTCATATGGGATATTCTGATCTAGGGACCTATTCCAGCTGTTGTATTCGACTTTGGGTTTATGGGGATATGTTTTGGCACTTACATGTTACTACTACCATGTCTTCCATGGCCTCCACGACCCGAGACGAATCCTCCGACAACGACAGCAACTGCTCCTCGGTAACCGCACCGGACTCCTCCCGCACCTGGCTCACCACCTTTAGCTTCCGCCGCTCCAACCGCAGCTCCTTCTCCCTCTCCACCGTCCAGACCACCTCAAGAGCTGCATGCGAGGCCATGCGCCGCCTCCGCCTCCACACCGGCGCCATCGGCCTCGACCACTTCCGCCTTCTGCGGCGGCTCGGCAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACGGAACCCGGCGGTGGGGTTGCCGCAGTGCCTCTACGCCATGAAGGTGGTGGATAGAGAGGCGCTGGCCATACGGAAGAAGCTACAACGAGCGGAGATGGAGAAGGAGATTCTGGCCATGATGGATCACCCCTTCTTGCCTACCCTATACGCTGCGTTTGATGCCTCTCATTACTCTTGCTTCGTCATGGACTTTTGCCCCGGCGGAGACTTGTTCTCCGCTCGCCAACGCCTCCCCGGAAAACGCTTTACCATCTCATCCACTAAGTTTTATGCAGCAGAGACACTTGTGGCACTAGAGTATCTCCACATGAAGGGCATAGTGTACAGGGATTTGAAGCCGGAGAATGTGCTGGTAAGGGAAGACGGTCACATTATGCTTTCGGATTTTGATCTGTGTCTGAGATGCGATGTTGTTCCAAAGCTGTTGAGAAGCAAAACCAGATCAGAACGCAGCATCAAGACTCGAACATCTTCTTGTGCTGCCCCCATGCAATCCTGTTTCTCTGCCTCAAGCAAGAGAAAGAAGGTGACAACAGTTATAAGGGAAAATGTGGAGGTGTGTGAACTTGACACAGAGGTGGTGGCAGAGCCCATCAATGCAAGGTCCAAGTCATTTGTGGGAACCCATGAGTACTTGGCACCAGAAGTGATTTCTGGTCAAGGACATGGTAGTGCAGTGGATTGGTGGACTTTTGGAGTTTTCTTGTATGAAATGTTATATGGGAGAACACCCTTCAAAGGTGAGAACAATGAGAAAACACTCACGAACATTCTCAAGCAGCCCTTGTCTTTCCCTAGAATTGCAGTGAGTAGCAGCAAGGAGTATGAAGAGATGGTGAAGGTTCAAGACCTCATCAGCAAGCTCTTGGTCAAGAACCCAAAGAAGAGAATTGGGTGCTGCATGGGGTCAGTTGAGATCAAGAGGCATGAGTTCTTCAAGGGAGTGAACTGGGCTCTAATTAGATCAGTTAGGCCACCTGAGTTCCCTGCTGATTTGAGCAAGATTAGGAGTAGAGTTTTGTTACAGAAACTAAGCAAGAAAGACAAGGATCAACCGTTTCAGATTACTCATCATTTTGACTACTTCTGA 1554 0.5051 MNFLLCLHNGTKLSHHLSERWGHNWDGHMGYSDLGTYSSCCIRLWVYGDMFWHLHVTTTMSSMASTTRDESSDNDSNCSSVTAPDSSRTWLTTFSFRRSNRSSFSLSTVQTTSRAACEAMRRLRLHTGAIGLDHFRLLRRLGSGDIGNVYLCQIRNPAVGLPQCLYAMKVVDREALAIRKKLQRAEMEKEILAMMDHPFLPTLYAAFDASHYSCFVMDFCPGGDLFSARQRLPGKRFTISSTKFYAAETLVALEYLHMKGIVYRDLKPENVLVREDGHIMLSDFDLCLRCDVVPKLLRSKTRSERSIKTRTSSCAAPMQSCFSASSKRKKVTTVIRENVEVCELDTEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLTNILKQPLSFPRIAVSSSKEYEEMVKVQDLISKLLVKNPKKRIGCCMGSVEIKRHEFFKGVNWALIRSVRPPEFPADLSKIRSRVLLQKLSKKDKDQPFQITHHFDYF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02370 517 Pfam Protein kinase domain 136 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02370 517 Pfam Protein kinase domain 357 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02370 517 FunFam Serine/threonine-protein kinase OXI1 224 292 - -
Phco7g02370 517 PANTHER FLIPPASE KINASE 1-RELATED 66 486 - -
Phco7g02370 517 MobiDBLite consensus disorder prediction 65 85 - -
Phco7g02370 517 Gene3D Transferase(Phosphotransferase) domain 1 354 481 - -
Phco7g02370 517 SMART serkin_6 135 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02370 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Phco7g02370 517 FunFam serine/threonine-protein kinase D6PK-like 355 485 - -
Phco7g02370 517 Coils Coil 168 188 - -
Phco7g02370 517 CDD STKc_phototropin_like 133 485 - -
Phco7g02370 517 Gene3D Phosphorylase Kinase; domain 1 133 219 - -
Phco7g02370 517 ProSiteProfiles Protein kinase domain profile. 135 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02370 517 SUPERFAMILY Protein kinase-like (PK-like) 119 488 IPR011009 -
Phco7g02370 517 Gene3D Transferase(Phosphotransferase) domain 1 220 289 - -
Phco7g02370 517 FunFam protein kinase PINOID 2 133 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02370 Phco-Chr7 41463548 41468383 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco7g02370 Pkinase 3.3e-31 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02370 7 41463548 41468383 Phco7g02370 7 41463548 41468383 ECH
Phco8g01545 8 15912692 15914544 Phco7g02370 7 41463548 41468383 PCT