Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02354 ATGTACATCAAGCAGGTTGTGATCGAAGGTTTTAAGAGTTATCGAGAGCAAATTTCCACAGAGCCTTTCAGCTCTAAAGTGAACTGTGTTGTTGGTGCTAATGGATCTGGGAAGACAAACTTTTTTCATGCCATCCGTTTTGTATTAAGTGATCTCTTTCAAAACCTACGCAGTGAAGATCGACAGGCACTACTCCATGAAGGAGCTGGACACCAGGTTTTATTTGCATTTGTGGAGATCGTGTTTGATAATTCCGACAACCGTATCCCGGTTGACAAGGATGAAGTGCGATTGCGCCGGACTATAGGTTTAAAAAAGGATGAGTATTTTCTTGATGGAAAACACATAACGAAAACTGAAGTGATGAATTTGCTGGAGAGTGCTGGGTTCTCCCGTTCAAATCCTTATTATGTTGTACAACAAGGAAAGATAGCATCATTAACCTTGATGAAAGACTCTGAACGACTGGACTTGCTGAAGGAAATAGGTGGTACTAGAGTTTATGAGGAGAGGCGCCGTGAAAGTTTGAAAATAATGCAGGAAACTGGTAATAAAAGAAAGCAAATAATCCAAGTTGTACAGTATTTAGATGAAAGGTTGAAGGAACTAGACGAGGAAAAGGAGGAACTTAGAAAATATCAACAGCTTGACAAACAAAGAAAATCGTTAGAATATGCTATTTTTAGCAAAGAAGTTCAAGATGCTCAGCAAAAACTTACAGAGATAGAAGATGTTCGGGCAAAGGTTTCTGAAACATCAGCAAAGAAGTATAATGATGTTCTTGATGCACATGAGAAATCCAAAGATTTAGAGAATACATTAAAAGATGTATCAAAAGAACTTCAAAACTTTAACAAAGAAAAAGAGTCTATTGAAAAGCGACGAACAATTGCATTAAAGAAGCACACAGAACTTGAGCTTGATGTCAAAGACTTGCAAGAGAAGACCTCTGGAAACATCCGAGCCAAGGAAGATGCTGCAAGACAACTGGAGATACTTGAGAAAGAAATTCAAGATTCAACCGTTGAATTGGGCAAAATCGTTCCCTTACATGAGAATCAAGTTCTGAAAGAAAAAGACATTGCCATGCGAATAATGGAGCGTGAAAAGAAACTCAGTATACTTTATCAAAAGCAAGGACGAGCAACTCAGTTTTCAAGTAAAGCTGCTCGTGATAGGTGGCTTCAAAAGGAGATTGATGATCTTGAACGGGTGCATTCTTCAAATAAGGGGCAGGAGCAAAAGCTTTTGGAGGAAATTGATCGGCTTAAAGAAGAACTGCAAGATTGTGATGAGATCATAAATAGGCGGAAATCAGATATTACTACTTTGGAATCTCTCATTGCTGAGTCATTTAAAGGGCTTAATCAATTCAAATTGGAGAGAGACAAGTTAAATCTCGAGAGGAAGTCCCTATGGACAAAAGAGAATGAAATTATTGCTGAAATTGATAAGCTGAGAGCCGAAGTTGAGAAGGCCGAAAAGAATCTTGATCATGCAATTCCTGGTGATGTGAGAAGAGGGATGAATTCAGTTAGGAAGATTTGCAAGGAGTATAATATTTCTGGAGTTCATGGTCCAATTATTGAGTTGCTGAATTGTGATGAGAAGTTTTTCACTGCTGTTGAAGTTACAGCAGGAAACAGCTTATTTCATGTTGTTGTTGAAAATGATGACAAGTCAACCCAGATAATTAGACATCTTAATTCACAGAAAGGTGGTCGAGTTACATTTATTCCGCTTAACAGAGTAAAGGCTCCACGCATCACTTATCCACAGAGTTCAGATGTCATACCTCTTTTGAAGAAATTGAATTTTAAACATGACTATACTCCTGCTTTCAGTCAGGTATTTGCTAGAACAGTTATCTGCAAGAATTTGGATGTGGCTTCAAGGGTTGCTCGTACTGATGGTCTGGACTGCATAACACTGGATGGTGATCAGGTAAGCAAGAAAGGTAGTATGACTGGAGGATTTTATGATCACCGACGATCGAGATTAAGGTTTATGAATATCATTAAGCAGAATACAGACACTATTCATGTTAGAGAGGAGGAATTGGAGAAAATAGACCAAAAGATTAATGAACTTGTTGCTGAGCAGCAGAAGATTGATGCCAAGCGTGCTCATGACAAATCCGAGATAGAACAGCATAAGCAAGATATTGCTAATGCTAATAAGCAGAAACAGTTGATTTCTAAAGCACTTACAAAAAAGGAGAAGTCTGTTGGGGATGTCCAGAATCAGATTGAACAGCTTAAGGCTAGTATCGCAATGAAAAATGCTGAGATGGGCACCGAGCTAATTGATCATTTAACGCCAGAGGAAAAGAAACTTCTGTCAGATTTGAACCCTGAAATCAAAGACCTTAAAGAGAAGCTTGTTGCTTGCAAGACTGATCGTATTGAGACTGAAGCAAGGAAAGCAGAACTGGATACCAATCTAACTACCAACCTTAGGAGAAGGAAACAAGAGCTGGAGGCTGTGATATCATCTGTGGATTCTGACTCTCTGGTTGGTGAGGCTGAATCCAAGGGGCAGGAACTTAGTGATGCTAAAATGTTGGTTGATGACTTGACAGAGCAGCTTAGAAGAGTTGCTGAAAGTATAAATGACCGAACAAGGCAAATTAAAAAGATCAAAGATGAATTGAATAAATTGAAGTCTTTGGAGGACGAGTATGAAAGGAAACTTCAGGAAGAAGCAAAAGAACTAGAGCAATTGCTGAGTAAAAAAAATACATATGCGGCTAAAGAAGAAGAATATGCCAAGAAAATAAGGGACCTGGGACCATTGACATCAGATGCTTTTGAGGCGTATAGACGAAGGAATGTAAAAGATTTGCACAAAATGCTGCACAGGTGCAACGAGCAATTGCAGCAGTTCAGTCATGTAAACAAGAAAGCACTTGACCAGTATATAAATTTTACAGAACAACGAGAAGAACTTCAGAAAAGACAGGCTGAACTTGATGCAGGGGATGAGAAAATCAGGGAGCTGATATCAGTGCTAGATCAGCGGAAGGACGAATCAATAGAACGCACTTTCAAAGGTGTTGCAAGGCATTTTCGGGAAGTATTTTCTGAACTTGTGCAGGGTGGCCACGGTCATCTGGTTATGATGAAAAAGAAGGATGGTGATCATGACGATGACGATGATGAGGATGGTCCTCGGGAAGCAAATCCGGAGGGGAGAGTAGAAAAATACATTGGAGTGAAAGTGAAGGTCTCTTTTACTGGGCAAGGGGAAACACAGTCCATGAAACAGTTGTCTGGGGGTCAAAAAACTGTTGTTGCCCTTACACTTATCTTTGCCATTCAGCGATGTGATCCTGCTCCCTTTTATCTATTTGATGAGATTGATGCAGCTCTGGATCCACAGTACAGAACTTCTGTTGGATATATGATTCGTCGCTTGGCGGACATTGCAAACACTCAATTTATCACAACAACATTTCGCCCAGAGCTAGGTCAGTCGTGTTAA 3483 0.3968 MYIKQVVIEGFKSYREQISTEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRQALLHEGAGHQVLFAFVEIVFDNSDNRIPVDKDEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYAIFSKEVQDAQQKLTEIEDVRAKVSETSAKKYNDVLDAHEKSKDLENTLKDVSKELQNFNKEKESIEKRRTIALKKHTELELDVKDLQEKTSGNIRAKEDAARQLEILEKEIQDSTVELGKIVPLHENQVLKEKDIAMRIMEREKKLSILYQKQGRATQFSSKAARDRWLQKEIDDLERVHSSNKGQEQKLLEEIDRLKEELQDCDEIINRRKSDITTLESLIAESFKGLNQFKLERDKLNLERKSLWTKENEIIAEIDKLRAEVEKAEKNLDHAIPGDVRRGMNSVRKICKEYNISGVHGPIIELLNCDEKFFTAVEVTAGNSLFHVVVENDDKSTQIIRHLNSQKGGRVTFIPLNRVKAPRITYPQSSDVIPLLKKLNFKHDYTPAFSQVFARTVICKNLDVASRVARTDGLDCITLDGDQVSKKGSMTGGFYDHRRSRLRFMNIIKQNTDTIHVREEELEKIDQKINELVAEQQKIDAKRAHDKSEIEQHKQDIANANKQKQLISKALTKKEKSVGDVQNQIEQLKASIAMKNAEMGTELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKTDRIETEARKAELDTNLTTNLRRRKQELEAVISSVDSDSLVGEAESKGQELSDAKMLVDDLTEQLRRVAESINDRTRQIKKIKDELNKLKSLEDEYERKLQEEAKELEQLLSKKNTYAAKEEEYAKKIRDLGPLTSDAFEAYRRRNVKDLHKMLHRCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTSVGYMIRRLADIANTQFITTTFRPELGQSC 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02354 1160 Coils Coil 849 918 - -
Phco7g02354 1160 Coils Coil 225 252 - -
Phco7g02354 1160 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1157 - -
Phco7g02354 1160 SMART SMC_hinge_2 522 634 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Phco7g02354 1160 Pfam SMC proteins Flexible Hinge Domain 522 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Phco7g02354 1160 Coils Coil 186 216 - -
Phco7g02354 1160 Coils Coil 406 440 - -
Phco7g02354 1160 SUPERFAMILY Smc hinge domain 473 676 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Phco7g02354 1160 CDD ABC_SMC3_euk 3 166 IPR041741 GO:0005524|GO:0016887
Phco7g02354 1160 PIRSF SMC 1 1159 IPR024704 GO:0005524|GO:0016887
Phco7g02354 1160 Coils Coil 966 986 - -
Phco7g02354 1160 MobiDBLite consensus disorder prediction 1040 1064 - -
Phco7g02354 1160 Coils Coil 260 315 - -
Phco7g02354 1160 Coils Coil 323 343 - -
Phco7g02354 1160 Gene3D - 594 659 - -
Phco7g02354 1160 FunFam Structural maintenance of chromosomes 3 1 197 - -
Phco7g02354 1160 Gene3D - 979 1160 IPR027417 -
Phco7g02354 1160 Pfam RecF/RecN/SMC N terminal domain 2 1156 IPR003395 -
Phco7g02354 1160 Coils Coil 787 807 - -
Phco7g02354 1160 Coils Coil 680 763 - -
Phco7g02354 1160 Coils Coil 476 496 - -
Phco7g02354 1160 Gene3D - 1 178 IPR027417 -
Phco7g02354 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1156 IPR027417 -
Phco7g02354 1160 Gene3D - 479 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02354 Phco-Chr7 41224347 41251757 Dispersed