Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02340 ATGGGTTTGGGAGTGTTGGGTTCTGTTCTAGTTCTGACATTCTTCTTCAAGCACTTTGCATCCCAGCAACCAAACACTGATGATTTCCTTGTGTCTGAGTTTTTGAAGAAGATGGGCTTAGCATCCTCCCAGGTCTACAACTTTTCTGCTTCTGTTTGTTCATGGCAAGGGGTTTCATGTGATGCCAAGAGAGAACATGTTATTGGGTTAGTCTTTTCAGGCATGGACCTTTCTGGTCCTATTCCAGACACCACCATAGGCAAGCTCACCAAGCTTCGATCTTTGGACCTTAGCCACAACAAAATCACCGACTTGCCTTCTGATTTCTGGAGTTTTAGCTTGCTCGAGAACCTTAACCTCTCCGGCAATCGGATTTCTGGCTCATTGACTAACAACATAGGAAACTTTGGTTTGCTAGAAGTATTGGACTTGTCCAGCAACAATTTCTCTGGGGAAATTCCTGAAGCTATTAGTTCCCTCGTGAGTCTGAAAGTCATCAAACTTGACCACAACCGGTTTGAGCAAAGAATACCTTCTGGGATTCTTGAGTGTCGTTCTCTTGTTTCAATTGATCTTTCTTCAAATCGGTTAAGTGGGACAATTCCGGATGAGTTTGGTGCTGCTTTTCCTAATCTCATTACCTTGAACCTTGCTGGGAATAGTATTAATGGCAGTGATTCTGATATTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCTGAAAATTCCTTTCAGGGTTCTGTGATGAAGTTATTTCAGGGAAGGCTTGAGGTCATGGATCTTAGAAGAAACCATTTTGAAGGTCGCATTTCTCAGGTACATTCCATCTCTAATTACAATTGGTCTCATTTAGTTTATCTTGACTTGTCAGAGAATCAGCTAAATGGGGAGATTTCCCAAAATTTTATTGAATCCAAGAATCTGAAGCACCTTAATCTTGCCCACAATAGATTCAGCAGACAGAAATTCCCCAATATTGAAATGCTATCAGGATTAGAATACCTGAACTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTGAAATCTCACAACTTCGTAATTTGAGTGCACTAGATGTTTCTATGAACCATCTTATAGGAAAAATCCCTTTACTGAACAATACAAACCTTCAAGTTCTTGACCTTTCAAACAACAATCTGAGCGGAGATGTCCCATCATCAGTCATAGAGAAACTTCCTTTAATGGAAAAATACAACTTCTCTTATAACAACTTATCCTTCTGTGCTTTGGAAACCAAATCAGCTATCATCCAAAGAGCATTCTATGGATCAGTGAACAGTTGCCCTATTGCTGCGAAGCCAAGTCTTCCAAAAAAAAGAGCCACTGAAAATAAGGGAATGAAGCTAGCTCTAGCATTGACCTTCTCAATGATCTGCTTGATTGCTGGGCTTATGCTTCTAGCTTTTGGTTGCCTTAAGAAAACAAAACCATGGCCTGTTAAACAAAATTCATACAAAGAAGAACATAACATATCAGGTCCCTTTTCATTCCACACAGATTCAACCACTTGGGTGGCTGATGTTAAGCAAGCAACATCCGTCCCAGTGGTAATCTTTGACAAGCCACTATTAAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGGAAATTTGGGCCTGTTTATAGAGGATTTCTACCAGGTGGTATTCATGTAGCAGTTAAAGTACTGGTGGTTGGATCCACTCTTACAGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGAAGAATAAAGCATCCCAATCTTGTTCCTCTAACCGGATATTGTGTAGCTGGGGATCAGCGGATTGCTATATATGACTACATGGAGAATGGGAACTTACAAAATTTGCTTTATGACTTGCCACTTGGTGTTGTTCTTCAAAGTACAGATGATTGGAGCACAGATACATGGGAAGAAGATGGCAGTAATGGGATCCAAAATGCTGGATCAGAAGGAGGCCTCACAACTTGGAGATTTCGCCATAAAATTGCACTCGGCACTGCAAGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCAATCATTCACAGAGATCTTAAAGCTAGCAGTGTATATTTGGACTATAACTTGGAGCCAAGACTTTCAGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGCTTGGATGAGGAGATTGGACTTTGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTCTACACCTCAACTCCAAAATCAGATGTGTACTGTTATGGGGTTGTTCTCTTTGAGCTACTATCTGGGAAGAAGCCTGTTGGAGATGATTATCCTGATGTGAAAGAAGGAACTTTGGTTAGTTGGGTGAGAGGGTTAGTGAGAGAGAACAAAGCTTCAAGAGCCATTGATCCAAAAATTCGTTATACTGGAGCAGAAGAGCAAATGGAGGAAGCCCTTAAGATTGGTTATCTCTGCACTGCTGATCTTCCTTCCAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTTCTCCTAATTAG 2568 0.4116 MGLGVLGSVLVLTFFFKHFASQQPNTDDFLVSEFLKKMGLASSQVYNFSASVCSWQGVSCDAKREHVIGLVFSGMDLSGPIPDTTIGKLTKLRSLDLSHNKITDLPSDFWSFSLLENLNLSGNRISGSLTNNIGNFGLLEVLDLSSNNFSGEIPEAISSLVSLKVIKLDHNRFEQRIPSGILECRSLVSIDLSSNRLSGTIPDEFGAAFPNLITLNLAGNSINGSDSDISGLKSIVSLNISENSFQGSVMKLFQGRLEVMDLRRNHFEGRISQVHSISNYNWSHLVYLDLSENQLNGEISQNFIESKNLKHLNLAHNRFSRQKFPNIEMLSGLEYLNLSKTSLIGYIPAEISQLRNLSALDVSMNHLIGKIPLLNNTNLQVLDLSNNNLSGDVPSSVIEKLPLMEKYNFSYNNLSFCALETKSAIIQRAFYGSVNSCPIAAKPSLPKKRATENKGMKLALALTFSMICLIAGLMLLAFGCLKKTKPWPVKQNSYKEEHNISGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVVLQSTDDWSTDTWEEDGSNGIQNAGSEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDLKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIGLCSPGYVPPEFSQPEFYTSTPKSDVYCYGVVLFELLSGKKPVGDDYPDVKEGTLVSWVRGLVRENKASRAIDPKIRYTGAEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPSPN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02340 855 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Phco7g02340 855 Gene3D Ribonuclease Inhibitor 253 324 IPR032675 -
Phco7g02340 855 Gene3D Ribonuclease Inhibitor 31 178 IPR032675 -
Phco7g02340 855 Gene3D Ribonuclease Inhibitor 325 433 IPR032675 -
Phco7g02340 855 PRINTS Leucine-rich repeat signature 376 389 - -
Phco7g02340 855 PRINTS Leucine-rich repeat signature 92 105 - -
Phco7g02340 855 SMART LRR_typ_2 377 400 IPR003591 -
Phco7g02340 855 SMART LRR_typ_2 89 111 IPR003591 -
Phco7g02340 855 SMART LRR_typ_2 209 232 IPR003591 -
Phco7g02340 855 SMART LRR_typ_2 330 354 IPR003591 -
Phco7g02340 855 SMART LRR_typ_2 160 184 IPR003591 -
Phco7g02340 855 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 282 415 - -
Phco7g02340 855 SUPERFAMILY L domain-like 43 417 - -
Phco7g02340 855 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Phco7g02340 855 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Phco7g02340 855 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Phco7g02340 855 Pfam Protein tyrosine and serine/threonine kinase 551 845 IPR001245 GO:0004672|GO:0006468
Phco7g02340 855 SUPERFAMILY Protein kinase-like (PK-like) 532 848 IPR011009 -
Phco7g02340 855 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Phco7g02340 855 Pfam Leucine Rich Repeat 378 396 IPR001611 GO:0005515
Phco7g02340 855 ProSiteProfiles Protein kinase domain profile. 547 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g02340 855 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Phco7g02340 855 Gene3D Ribonuclease Inhibitor 179 252 IPR032675 -
Phco7g02340 855 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 106 201 - -
Phco7g02340 855 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Phco7g02340 855 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Phco7g02340 855 Gene3D Transferase(Phosphotransferase) domain 1 658 854 - -
Phco7g02340 855 SMART LRR_sd22_2 89 120 - -
Phco7g02340 855 SMART LRR_sd22_2 306 329 - -
Phco7g02340 855 SMART LRR_sd22_2 376 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02340 Phco-Chr7 41091273 41093840 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Phco7g02340 PK_Tyr_Ser-Thr 1.3e-32 CL0016