Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02331 | ATGTTAGAGCAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACATGTAAAGAACTTGGGAACGCTCTGAAAGGTTCCCCTATAGATACCTTAATTCGTTCCTGTCTTTTGGAGGAGCGATCCGGTGCGGCATCATACAATTATGATGCTCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTGTTTGTGGCTGTGTACCAACGGATTCTTCACCTCTTGTATGTGGAAGATCTGCTTGCTATGGTGAAGCGTGAGTTTTCGCAGATCTATGATCCCAAAAGGACTGTTTACCCTGATTTTGATGAGACCTTTAGGCAGCTAAAGATGGAGGCTCTGGCCCGTGCTGAAGATTTGAAACGGTCGAATCCAAATCCTGTTGCTGGGAATGCTAAGAAGCAGGCGCAGGGGAACAATAAGTTGGGATTCGAGGGAGGAAATAAGAAGAAGAGTGGTGGTGCGGGGAAGGATGGTGGTGGGGTAGACGGTGGTGACGATGGCAAGGGACGGAGGTCTGAGAATGGGCACTCCAATGGAAATTTTGTTGTTGCTAAAGATGCTAACCATAGTAGTGATGTGAATGGTAGACAGAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGGTAGTAGATACGGCTGCAAAGGCCTCCAAGGCTGAGCCAAACAAAAAAGTCATAAAGAAAAATAGGGTGTGGAATGAAGCTGCTACTAAGGAAACAAAATTGGACTTTACTGATCATTCTGCTGAGGATGGGGACAGGAACATAGATTATGTGGTTGCAGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATGGTTAGCTCTGAAAGTGAGGAGGAAGAGGAGGAGAATGTGGGAAAGAAGAGAAAGCCTGACGCCAAAAACAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTGGAGAAATCGGACTTAGAACCAGCTTTGAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTTGCAGCAAGCCTTGAAGGCAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCAATGGAAGAAGCTCTTATTCGAATTTTAACTCCCAGACGTTCTATTGATATACTGAGGGATGTGCATGCTGCCAAAGAACAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTCAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTATTGGCTTCTGCAGCACAAGGTCAGTGTCATGATGGCTGCCTGTGACACATTTCGATCAGGGGCTGTTGAACAGCTGCGGACCCATGCTCGGAGACTTCAGATACCTATATATGAGAAGGGGTATGAGAAAGATCCTGCCGTTGTTGCAAAAGAAGCAATTCAAGAAGCTTCGCAAAATGGTTCAGATGTGGTTCTGGTTGATACGGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTCCTCTTTGTTGGAGAAGCACTGGTTGGTAATGACGCAGTTGATCAGCTTTCAAAGTTCAATCAGAAATTAGCGGACCTCGCAACATCACCTAACCCAAGATTGATTGATGGGATCTTGCTCACCAAGTTTGACACCATTGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATTTCTGGAGCTCCTGTTATGTTTGTGGGCTGTGGACAGTCTTACACTGACCTCAAGAAACTCAATGTCAAATCAATTGTGAAGACTCTTCTTAAATGA | 1878 | 0.4452 | MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGASYTLKWTFHNELGLVFVAVYQRILHLLYVEDLLAMVKREFSQIYDPKRTVYPDFDETFRQLKMEALARAEDLKRSNPNPVAGNAKKQAQGNNKLGFEGGNKKKSGGAGKDGGGVDGGDDGKGRRSENGHSNGNFVVAKDANHSSDVNGRQNGSPNVGAFDVHKLQKLRTKGGKKVVDTAAKASKAEPNKKVIKKNRVWNEAATKETKLDFTDHSAEDGDRNIDYVVADQGESMMDKEEMVSSESEEEEEENVGKKRKPDAKNKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALIRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIYEKGYEKDPAVVAKEAIQEASQNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK | 625 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02331 | 625 | Gene3D | - | 403 | 625 | IPR027417 | - | |
| Phco7g02331 | 625 | PANTHER | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA | 65 | 625 | - | - | |
| Phco7g02331 | 625 | CDD | SR_alpha_SRX | 3 | 116 | - | - | |
| Phco7g02331 | 625 | ProSitePatterns | SRP54-type proteins GTP-binding domain signature. | 598 | 611 | IPR000897 | GO:0005525|GO:0006614 | |
| Phco7g02331 | 625 | SMART | SRP54_3 | 419 | 625 | IPR000897 | GO:0005525|GO:0006614 | |
| Phco7g02331 | 625 | Gene3D | - | 286 | 401 | IPR042101 | - | |
| Phco7g02331 | 625 | FunFam | Signal recognition particle receptor subunit alpha | 1 | 125 | - | - | |
| Phco7g02331 | 625 | FunFam | Signal recognition particle receptor subunit alpha | 288 | 401 | - | - | |
| Phco7g02331 | 625 | Pfam | Signal recognition particle, alpha subunit, N-terminal | 28 | 302 | IPR007222 | GO:0003924|GO:0005047|GO:0005525|GO:0005785|GO:0006886 | |
| Phco7g02331 | 625 | CDD | SRalpha_C | 432 | 623 | - | - | |
| Phco7g02331 | 625 | FunFam | signal recognition particle receptor subunit alpha | 403 | 625 | - | - | |
| Phco7g02331 | 625 | Pfam | SRP54-type protein, helical bundle domain | 321 | 390 | IPR013822 | GO:0005525|GO:0006614 | |
| Phco7g02331 | 625 | MobiDBLite | consensus disorder prediction | 125 | 191 | - | - | |
| Phco7g02331 | 625 | Gene3D | - | 1 | 124 | - | - | |
| Phco7g02331 | 625 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 416 | 624 | IPR027417 | - | |
| Phco7g02331 | 625 | SMART | SRP54_N_2 | 316 | 398 | IPR013822 | GO:0005525|GO:0006614 | |
| Phco7g02331 | 625 | MobiDBLite | consensus disorder prediction | 135 | 149 | - | - | |
| Phco7g02331 | 625 | SUPERFAMILY | Domain of the SRP/SRP receptor G-proteins | 319 | 400 | IPR036225 | - | |
| Phco7g02331 | 625 | SUPERFAMILY | SNARE-like | 1 | 120 | IPR011012 | - | |
| Phco7g02331 | 625 | SMART | AAA_5 | 418 | 558 | IPR003593 | GO:0016887 | |
| Phco7g02331 | 625 | MobiDBLite | consensus disorder prediction | 288 | 315 | - | - | |
| Phco7g02331 | 625 | Pfam | SRP54-type protein, GTPase domain | 420 | 624 | IPR000897 | GO:0005525|GO:0006614 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02331 | Phco-Chr7 | 40948320 | 40952685 | Dispersed |