Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02327 ATGGCTGTGGAAAATCAAAGGGATCATTTGGGGGATGAAGATGGGGGTGTTGACCGTTTTCCTGTGGGTATGCGTGTTCTAGCCGTGGATGACAACCCAATTTGTCTCAAAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATCAGGTTACTACAACTAATCAGGCAGTTGAGGCTCTGAAAATGTTGAGGGAGAATAGACATAAGTTTGACCTTGTTATCAGCGACGTGGATATGCCTGACATGGATGGATTTAAGCTTCTTGAGTTGGTGGGACTCGAAATGGACCTTCCTGTGATCATGTTGTCAGGACATAGTGATACAAAGCTGGTGATGCAGGGTGTTACACATGGGGCTTGTGACTATTTACTTAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAACACGTAGTCCGAAGAAAGAATTTTGATTCCAGGGATCAGAGCAAGGCATCCAATGACGAAAAGGCTCTGAATATTGCTGGGGAAGGTAGCCCAAGCCTAAGATCAGAAAACAGTGGTGATCAGAATAAAAGGCTTGGTAAAAAAAGAAAGGACCAAAGTGAGGAAGAAGAAGATGATGGGGAAGGGAATGGAGACGATGATGACCCCTCAGCACAGAAGAAACCTCGTGTTGTTTGGTCTGTTGTGCTGCATAGAAAATTTGTTGCTGCTGTTAATCAACTCGGCCTAGAAAAGGCTGTTCCCAAGAAAATTCTCGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTACAGAAGTATAGACTCTATCTGAAAAAGGCAAACCATCAGGCTAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACCTACGAATGGGTTCAATAGATGGATTTGGAGATTTTTGCACTGCTTCTGGTTCTGGAAGAATCTCAAACACTACATTACCATCATATGCATCTTCTGGAATTTTCAGTAGGCTGAATTCCCCAGCTGGCTTGAACATGCGAGGAATTAGTTCTTCAGCACTTATCCGTCCTGTTCAGACTCAAAGCATTAACAGCTCCTTAAACACCCTTGGAAACATTCAGCCATCCATTTTTTCTGCAAATCAGAACTCAAGTTTGTTGCAGGGCATTCCAACATCAATTGAGCTTAACCAATCTAAGCAAAACAACTGTTCAACTGGTTTATCACAGCGAGGTCAAGTTGATTCAAGTGGATTTGCAGTTGCCTCTGGCTTCCCAGACAGTAGGGCTGCAGTTAATGGTCCAAACAATTCTCTATCATGTGGCTCAAATAATCATATAATTTTACAAGGAAATCCACAGCAAACACATAGCCCAGGAGCATTTAGAAATCAGTCTTCTGTTAGAGCAGCTTCCTTGAGTGCAGAATCTTTTGGCATATGTGGTTCTTCTAATATGTTGGATTATAATCGGTGTAATGAAGACTGGCAGAATGCAGCACAGTTGTCCAAATTTCCGGCCAATTCCTTGCCATTGTGTGAGGCTTTCAGCAATGACCAACTGCCTCCCACTGGCATCAATGTTTCCAACTCAGGTACTCATATTGGCAACAGTCCAGTTGGTTTTTCTCCCAGAATGGCAATGACTGTTCCTTTGGAAGATATACAGCCTTTAAGCTATACACCACAACAAAGGTGGGAAGAACATAAATTGGATTATGACCAAAACATGAGTCGTCCCTTCAATCCTGTAAATTCATATGCTTCTTCTAGTGCAGCAACAAGTTCTATGGGACGTGGCTTAAATCAGAATAATACAATTTGTAGCAATAGAATTGATGCATCTTTGGTTGGCCCATGCACTGAAGTTGAGAAATTCTCTTCTGACATTCCACTGAAGTCGAATGAAGCCTACATTTTGGAGCAACTAAAGTCCCAAGAAGGATTTATGCATAATACTTTTGGTACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAACAAAATGAGTTGACGTTGTTGGATGGAGAAATTGGATTTGATGCCTCCTACCCTGTTGGATCATGCAACTGA 2031 0.4239 MAVENQRDHLGDEDGGVDRFPVGMRVLAVDDNPICLKVLENLLRKCQYQVTTTNQAVEALKMLRENRHKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSGHSDTKLVMQGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDSRDQSKASNDEKALNIAGEGSPSLRSENSGDQNKRLGKKRKDQSEEEEDDGEGNGDDDDPSAQKKPRVVWSVVLHRKFVAAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKANHQANMVAALGGSDSYLRMGSIDGFGDFCTASGSGRISNTTLPSYASSGIFSRLNSPAGLNMRGISSSALIRPVQTQSINSSLNTLGNIQPSIFSANQNSSLLQGIPTSIELNQSKQNNCSTGLSQRGQVDSSGFAVASGFPDSRAAVNGPNNSLSCGSNNHIILQGNPQQTHSPGAFRNQSSVRAASLSAESFGICGSSNMLDYNRCNEDWQNAAQLSKFPANSLPLCEAFSNDQLPPTGINVSNSGTHIGNSPVGFSPRMAMTVPLEDIQPLSYTPQQRWEEHKLDYDQNMSRPFNPVNSYASSSAATSSMGRGLNQNNTICSNRIDASLVGPCTEVEKFSSDIPLKSNEAYILEQLKSQEGFMHNTFGTLDDIMGAMVKREQNELTLLDGEIGFDASYPVGSCN 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02327 676 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Phco7g02327 676 FunFam Two-component response regulator 207 270 - -
Phco7g02327 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Phco7g02327 676 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Phco7g02327 676 Gene3D - 24 214 - -
Phco7g02327 676 SUPERFAMILY CheY-like 23 147 IPR011006 -
Phco7g02327 676 CDD REC_typeB_ARR-like 26 140 - -
Phco7g02327 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Phco7g02327 676 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Phco7g02327 676 SMART REC_2 24 136 IPR001789 GO:0000160
Phco7g02327 676 MobiDBLite consensus disorder prediction 146 210 - -
Phco7g02327 676 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Phco7g02327 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 380 IPR045279 GO:0009736
Phco7g02327 676 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phco7g02327 676 MobiDBLite consensus disorder prediction 177 192 - -
Phco7g02327 676 Gene3D - 215 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02327 Phco-Chr7 40877470 40881701 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco7g02327 Response_reg 3.8e-25 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02327 7 40877470 40881701 Phco7g02327 7 40877470 40881701 ECH