Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02310 ATGCAGCCACCCAAGCAAAATATCAAGCTTGAACGATGCGATATATGCGGTGCTCGTGGTTCAATAGAAAAAGTTGTTACTTGCTCTAAATGCAGCGTGATTCGACATGTTTATTGCATTCAAATTAATAGCACAATAATTCCTGAAGACTGGCTCTGTGAGACTTGCCAATCCAAGCACGATTCAACTTCACAACGTAAAGTGAATCAGGATGTTGGTTCGTGGGCTTCTAAAAGGAAACCATCTGTCAGAAGAGGCAAAGTGAAGTACCTTGACTTGGATGAAGTCATTAGACTTTCTTCTGGGAAGGCTTCGGCTGCATCAAAAAATGTTATTCCCAAGATTCCCTCCCTGTCTCCAAAAGCAAATCCTCCCATATTACCTCCTAAAGTACTTGGAAAGCTTCCAAGAAATGATGAAGTACACAAGAAGCCAATGACTAACCAACATGCTTCTTGCTCATTATTTAAAGATGGTGAACATAGCGACGATGCTGAGTGTAACAGGTCTAATATGGAAAAAAATGACCCTCAGAGTTTTCAGAAAAACTTCAACCTTTATCGTAAATTTTTACCCTCCTCAATTCATGCTTGGAGGGGTCAGATCCAAATTCTTCAAACAGCTGCATCTGGGATAATTTATGATGGGTTTGAGGCCCAACCACCATGCATTGTTAACAAGAAAGCATATAAATTTTCAAGAGAAATGCCATCAGTCCTGCAACTGGAGGCATTTCCTGCATTGAATGTCTTGACTAACATATTCCCAGATGAGTCTCCTAACCTTCAGGATATTGCATTGTACTTCTTTCCATCAGAATGTACTGATAGGTTCAGAAAAGACCTGAATGACATATTGAAGTTTATGAATGACGAGAAAGCAATGCTAAGAAGTTTTATTGACGGAGTGGAGTTGCTAGTATTTACCTCAAATCAACTTGATATAGATTCAAGGGGTGTTATTGCGGAAGTAAAGGGTGGACATTTCCTGTGGGGAGTCTTTCGTCAATTTAAAATTGATAAAGCTATTCAAGGAGAACCTGCCATGGAGCCAGTTGATATGGAAATTGATATGATTGGAGGAAAGGATGTGGAGGGAAGAGTTGATCACATTCAGAACCATAAACCCAAGAGTGCTTCTTATTCCACTAGGTTTTGA 1158 0.3981 MQPPKQNIKLERCDICGARGSIEKVVTCSKCSVIRHVYCIQINSTIIPEDWLCETCQSKHDSTSQRKVNQDVGSWASKRKPSVRRGKVKYLDLDEVIRLSSGKASAASKNVIPKIPSLSPKANPPILPPKVLGKLPRNDEVHKKPMTNQHASCSLFKDGEHSDDAECNRSNMEKNDPQSFQKNFNLYRKFLPSSIHAWRGQIQILQTAASGIIYDGFEAQPPCIVNKKAYKFSREMPSVLQLEAFPALNVLTNIFPDESPNLQDIALYFFPSECTDRFRKDLNDILKFMNDEKAMLRSFIDGVELLVFTSNQLDIDSRGVIAEVKGGHFLWGVFRQFKIDKAIQGEPAMEPVDMEIDMIGGKDVEGRVDHIQNHKPKSASYSTRF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02310 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Phco7g02310 385 SMART PHD_3 12 57 IPR001965 -
Phco7g02310 385 ProSiteProfiles Zinc finger PHD-type profile. 10 59 IPR019787 -
Phco7g02310 385 PANTHER - 13 351 - -
Phco7g02310 385 Pfam PHD-finger 12 58 IPR019787 -
Phco7g02310 385 SUPERFAMILY FYVE/PHD zinc finger 8 60 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02310 Phco-Chr7 40593564 40604477 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco7g02310 PHD 3.3e-08 CL0390