Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02297 ATGGAACTCACCGAAGAACAACAACGACAAGTGGAAGCGAACCGCGCAGCGGCGATCGCAAAACGCCAAGCGTTCTTAGAATCCAAAGCACAACAACAAGAACAACCTCATCGCGATGGAGAAATCACCACCAATCCCAACCCTTGGCACCTTTTCAAGTGCCAAAAGTTTCCTAAACCTCAACCCATGAAGTTCCTTGCCAGACTCGAAATATGCTCCCCCGATTCCTTCTCCATTACGCCCATTCCTCTCCCTTCATACCCCTTCCCCGGTCACCAGCATTGTCTCTCCACTCTAAACTCCATTCTCTCACACGTGATGCTTTCGCACTTCACACAGACCACAGGAGGGGTCAAGGCCTGTGTGTTCAAGCTCACGGAGTACCACGCCGTGCTCAGACAGTTAAAGGCTGAGGCGGAGGCGCTGCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTGGTGGAGCGTCTCTCGCATTCGGTCGCTGCTGGGCGGTGGACTCCGGTGCGGCCGGAGCACTTGGCCGACGAGGAGGTAGAGCGCCTGATCGCGAAACTCCCAAGGACTCTCCTGGACGTGTTGCTCCCTTTCCAGCACGACGGACTGCGTTTCGCGTTGAGAAGAGGCGCGCGGTGCCTCATTGCTGATGATATGGGCCTCGGGAAAACGCTCCAGGCTATTGCTATTGCCGGGTGTTTTCTGGATGAAGGGTCTATACTCGTCGTTTGTCCTGCTGTGTTGAGGTTTTCGTGGGCGGAGGAATTGGAGCGATGGCTTCCTTTCTGCTTGCCGGCTGATATACATCTCGTTTTTGGCCATCAAGACAACCCTATATACTTAACAAGAAGCCCTAAAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGAAAGAACATGCTTGAACTTGAATGGGCTCTTCTAATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAAACAGAACCAGGAGAGATACAGGCTGTTCTCGATGTGGCTTCAAAAGTCAATCGTATAATTCTGCTATCAGGGACCCCTTCTCTGTCAAGACCGTACGACATATATAACCAGATAAATATGTTATGGCCTGGTTTGCTGGGGAAGACCAAATACGAGTTTGCAAAAACTTATTGCGATTTAAAATATATTAAAGGCAATCAAGGCAAATATTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTCAAGGAACATGTGATGCTACAGTTACCTCCGAAACGTCGGCAAATTATAAGACTGTTGATAAAGCGATCGGATATAGTTGCTGCTAAAAATGCAATTGGGGTATTAAGTATTGAGGCCACTGAAAGGGAAAGTGAAGACACACCTTTGGAAGATTTGGATGAAGCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATTGTTTCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGCGAGAAAGGTATAAATTTTGTACGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTCGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGAAGTAGTGTTCTTGGAGCTACCACAATGCCCAACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACTAATGCAGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATATGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCTTTTTTAGACTCATCTTTTAAAAGTGATAATTGTGAAGAACAATTTGCATGCAAAGTTGCAGTAGAAGAAACACAATTGGATGAGCAACCTCCTGCAGTAAATTCAAATGATTCAGAAGCAATTCAAGATGATGAATCTGGCGAGGGATCTCCTTTTGTTAACAAGTCAACTGAGAGTTTTAATGTTTTGTTGCAGGATATGAAATCAGTTTCAACAACAGAAGCAGATGACAACCAGTCTGTTCAGCTGGTTGAAGCCGATAGTCATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATACACTGGACGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAACCACTTTATGAAAATTTTCGACCAGAGGAACTTGAATTGTTATGCTATGTTGCTGCTGATCAGAAACAGGTTCATGGTGAAAAACAAAAAATAGAGTATGTATCTGTCAAGGACAATCCCTCCTATAAGCATGCTCTTCTAACTTTTGCGGAAGAATGGAAGAACTTAAGGTCAATTGAACGCAGGAAGTTAATTGGGAAACCATTACAACTTCCTTTGGATGTTGAATTATGCTATTTGAGTGAAAGCAACAACCACAACAACAAAGGATTATTAAATGGTGGAAGTAAAAGACGCAAGACACCCTTAATAGAGATCAGCTATCCTTTACCACCAGATGCTGTTTGGAGGAAAGTTTATCTGCGAAGTGGCCACGGTAAGAAGGAAAAAGAATACAATCAAGGCTGGACTGTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGGGTAAGAATGCCCAGAGACCTGAATTTCTAGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGAATGAGAACTAGCAACAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAACTGCCAATTGAACTGTCATAAGCTTGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGACGAGAGTTCATAGAAAAAATAGCACCAAATGTTGCTAAACGGAAGAACATGCTTGAGAAGCTTGTCAATGAACCAACTGAAGGAAATGCATGGCATGCTGATCATATTGTTCCAGTATATGAAGGAGGAGGTGAATGCAAGCTAGAGAATGTGAGGACTCTTTGTGTGGCCTGTCATTATGATGTTACTGCCGCACAATGTGCTGAACGATGCAAAGCAAGAGCGAATGCCAAGAAAAAACTGAAAGGGTTAATGAATAGTATGAAAAATGGTATTAAGGGTTCAGCTGGCGCTAATATTAAGGACCATAGGGTTATCGATGAACGAGGTAGTATAATCGAGGATGAGCTTTTAGTCGAGGTTCCTGGAAGTGCCTATTCTTTAGCAGATAGCTAA 3381 0.4324 MELTEEQQRQVEANRAAAIAKRQAFLESKAQQQEQPHRDGEITTNPNPWHLFKCQKFPKPQPMKFLARLEICSPDSFSITPIPLPSYPFPGHQHCLSTLNSILSHVMLSHFTQTTGGVKACVFKLTEYHAVLRQLKAEAEALQVEEIPWATFNVVERLSHSVAAGRWTPVRPEHLADEEVERLIAKLPRTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPIYLTRSPKVVVISYTMLHRLRKNMLELEWALLIVDESHHVRCTKKTEPGEIQAVLDVASKVNRIILLSGTPSLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDLKYIKGNQGKYFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKNAIGVLSIEATERESEDTPLEDLDEADGKLSYQELGIAKLSGFREWLALHPIVSGSENASKMIIFAHHHKVLDGVQEFICEKGINFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQEVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNMNKSLQRVSCTTDGKYDAMKEIEVEGISFLDSSFKSDNCEEQFACKVAVEETQLDEQPPAVNSNDSEAIQDDESGEGSPFVNKSTESFNVLLQDMKSVSTTEADDNQSVQLVEADSHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLCYVAADQKQVHGEKQKIEYVSVKDNPSYKHALLTFAEEWKNLRSIERRKLIGKPLQLPLDVELCYLSESNNHNNKGLLNGGSKRRKTPLIEISYPLPPDAVWRKVYLRSGHGKKEKEYNQGWTVTDEPLCKLCQKQCLGKNAQRPEFLEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQLNCHKLVKDTRPLSLERRREFIEKIAPNVAKRKNMLEKLVNEPTEGNAWHADHIVPVYEGGGECKLENVRTLCVACHYDVTAAQCAERCKARANAKKKLKGLMNSMKNGIKGSAGANIKDHRVIDERGSIIEDELLVEVPGSAYSLADS 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02297 1126 Coils Coil 125 145 - -
Phco7g02297 1126 Pfam Helicase conserved C-terminal domain 502 604 IPR001650 -
Phco7g02297 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 367 IPR014001 -
Phco7g02297 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 650 IPR001650 -
Phco7g02297 1126 SMART ultradead3 191 386 IPR014001 -
Phco7g02297 1126 MobiDBLite consensus disorder prediction 681 707 - -
Phco7g02297 1126 Pfam HNH endonuclease 1024 1055 IPR002711 GO:0003676|GO:0004519|GO:0008270
Phco7g02297 1126 SMART helicmild6 521 604 IPR001650 -
Phco7g02297 1126 FunFam SNF2 DNA repair protein, putative 169 417 - -
Phco7g02297 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 418 IPR027417 -
Phco7g02297 1126 MobiDBLite consensus disorder prediction 26 42 - -
Phco7g02297 1126 Gene3D - 949 1084 - -
Phco7g02297 1126 Gene3D - 492 687 IPR027417 -
Phco7g02297 1126 Pfam SNF2-related domain 212 440 IPR000330 GO:0005524|GO:0140658
Phco7g02297 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 656 IPR027417 -
Phco7g02297 1126 MobiDBLite consensus disorder prediction 25 45 - -
Phco7g02297 1126 CDD HNHc 1018 1058 IPR003615 -
Phco7g02297 1126 Gene3D - 171 416 IPR038718 -
Phco7g02297 1126 CDD SF2_C_SNF 486 615 - -
Phco7g02297 1126 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1075 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02297 Phco-Chr7 40371705 40404423 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco7g02297 SNF2_N 5.8e-25 CL0023