Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02295 ATGGAAGAAGATCAAGAAGTGAAGCACTTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTGGGAGGTCACATGAGGTCACATGTCACCAATGTTTCAACCGAGACAGAGAAACTTTCGTTTTTCAGCAACAACAATGGTGGAGGAGATAGAGACACGGGAATATTGGGTTCTGAAGGGGGAACTAGCAATGGAGGCTATGGTCTGAGAGAGAACCCGAAGAAGACTTCGAGGTTCACGGATTCCATTGAGGACACTATGTTGGTCTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGCTTTTACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCATTCCGAGAGAGTATCCCAAAACAACAGCAGCTTATTGGAGGATCAAGATTCGTGGACCGAAAATACCAATGGTAGCCAGAGGATGGTCTTGGATGATAGCCACTCTGACGATGAAGCCACTGCTCCAAACCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACGTGGCTCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGTCAGAGCAGGAGCAGGAAGAGGTCGCCATGAGTTTGATGATGCTTAGCAGGGATGTTAATCCTTGGTGTGGTCTCAGTTCTCTTAACTCATTACACTTTGAATCTCCTTCTTTGGTTCCAACCAATTTAGATTCTAAGGCAGAAGGCAAGAGGGTTGTCTCCAATGGTTCTGAAAAAAAGGTTACCAAACCAAAGGATATGAAGTGGGAGTTTGGCAATTTGGATGCTTCAAATCTCAACTCCAAAGGTACCGAGAGTCCAGGATTTGGGGACAAGACCATGGTTTCCGTTCAGTGGAATGATAAGAAGGAGGAGCTTGATACTAATTCTGCATTTGAGGACAATGGAATAGATGATGATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAAGTGAAGGCAAGTTCTTCTAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGCTGAATTGAGCAAAAGCTCCACCAAGAGAGGAAAATTTGAGTGCACTACTTGCAAGAAAATCTTCCACTCTTACCAAGCACTTGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGAGTTCGAAGCTGACCTCTCCCCTGACCCAACAACAGAAAGTAAGCTCCTGAAGAATGAATATGTAGAAGAACATGAAATGGTTACTGTTACTCCTACTACTGCTGCTGCTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGAGTCCAAAAAGGGGAAAGGTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGACAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGTCTAGTGGGTCTGAGATTACTAGAAACTGTCAAAGTCAAACAGTTGTACTTGGGGGAGAAGCCCCAGAAATAAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGACGTGCTGAGCCTTACAAACCTTGGTGGGTAGTAGGAGGCAGCCACAAGCAAGAGGCACTGATAGGCCTCATTTCTAACTAA 1623 0.4486 MEEDQEVKHLCKFCSKSFPCGRSLGGHMRSHVTNVSTETEKLSFFSNNNGGGDRDTGILGSEGGTSNGGYGLRENPKKTSRFTDSIEDTMLVLDKLCKECGKGFYSWKALFGHMKCHSERVSQNNSSLLEDQDSWTENTNGSQRMVLDDSHSDDEATAPNRRRRSKRRRTRYVAPSTSSVSFVSESEQEQEEVAMSLMMLSRDVNPWCGLSSLNSLHFESPSLVPTNLDSKAEGKRVVSNGSEKKVTKPKDMKWEFGNLDASNLNSKGTESPGFGDKTMVSVQWNDKKEELDTNSAFEDNGIDDDRNNKYTSIKAKYLDSEVKASSSKSWVKNKSPEAELSKSSTKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTEFEADLSPDPTTESKLLKNEYVEEHEMVTVTPTTAAATGFDNEEERERESKKGKGHECPICLKVFPSGQALGGHKRSHHLSSGSEITRNCQSQTVVLGGEAPEIRDFFDLNLPASTEEEGNSHGRAEPYKPWWVVGGSHKQEALIGLISN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02295 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 446 468 IPR013087 -
Phco7g02295 540 Gene3D Classic Zinc Finger 347 468 - -
Phco7g02295 540 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Phco7g02295 540 ProSitePatterns Zinc finger C2H2 type domain signature. 352 372 IPR013087 -
Phco7g02295 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Phco7g02295 540 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 523 - -
Phco7g02295 540 MobiDBLite consensus disorder prediction 53 76 - -
Phco7g02295 540 MobiDBLite consensus disorder prediction 421 443 - -
Phco7g02295 540 SUPERFAMILY beta-beta-alpha zinc fingers 96 372 IPR036236 -
Phco7g02295 540 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Phco7g02295 540 Gene3D Classic Zinc Finger 1 121 - -
Phco7g02295 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Phco7g02295 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 350 377 IPR013087 -
Phco7g02295 540 SMART c2h2final6 350 372 IPR013087 -
Phco7g02295 540 SMART c2h2final6 95 117 IPR013087 -
Phco7g02295 540 SMART c2h2final6 446 468 IPR013087 -
Phco7g02295 540 SMART c2h2final6 9 31 IPR013087 -
Phco7g02295 540 Pfam C2H2-type zinc finger 9 31 - -
Phco7g02295 540 Pfam C2H2-type zinc finger 97 118 - -
Phco7g02295 540 Pfam C2H2-type zinc finger 350 374 - -
Phco7g02295 540 Pfam C2H2-type zinc finger 446 469 - -
Phco7g02295 540 MobiDBLite consensus disorder prediction 127 146 - -
Phco7g02295 540 MobiDBLite consensus disorder prediction 147 161 - -
Phco7g02295 540 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Phco7g02295 540 MobiDBLite consensus disorder prediction 127 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02295 Phco-Chr7 40340420 40342042 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco7g02295 zf-C2H2_6 2.2e-12 CL0361