Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02284 ATGGTGGGTGGGACTGTCTTTTCCGCTGCTTCAAATTTAACCACTTTGCTTTCCAACCAAACAGCTCCTTCAGCCTCTCAGCCTATCGATTCTCTTTTCCACTCTTCTTCTTCTTCCCCTTTTTTCGGTTCAAGATCTATAGTGAGCTTTGGAGATGTTCAAGGGGGGAAAGGGTGCAACGAGTCGTTCTTCCTGCCTTATGATGATAATGGGGATGAGGACACGGACGAGTACTTTCATCAGCCTGAGAAAAAACGCAGGCTTTCCGTTGAGCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAGGCTCGAACCCGAGAGGAAGATTCGGCTAGCTAAAGAACTCGGGTTGCAGCCGCGGCAGGTGGCGATTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACCAAGCAGATGGAGAAGGATTATGATTCCCTGCTGGCTTGCTATGATGATCTCAAGGCCAACTATGATGATCTTCTCAGGGAAAAGGATGAACTCAAAGCTGAGGTAGCAAAGCTCACTGAGAAGGTGCTTGGAAGAGAAAAAGTGGAAGAGGGGAACTTTGAAAAGGCTGAAACCAAGGGATGTTTTCAGGAGCCGGTGCAGAAGTCTATGATTGATTCAGCTTCTGAGGGTGAAGGGTCCAAAGTGTCCATCGGGGCTTGTAAACGGGAAGACATTATTAGTTCAGCGAAGAGTGAGATGTTTGATTCATCAGAAAGCCCACGTTACACTGATGGAGTGCATTCTGCTCTCCTTGAGACTGGTGACTCTTCTTATGTGTTTGAACCTGATCACTCTGATGTGTCTCAGGATGAAGGAGATAACCTGAGCATGACGCTTTTGCCTCATTACATGTTTCCCAAACTTGAGGATATTGGTTACTCCGACCGGCCTCATAGTTCATGTCATTTTGGAATTCCTGAGGAAGATCAAGCCATTTGGTCTTGGTCTTACTGA 969 0.4716 MVGGTVFSAASNLTTLLSNQTAPSASQPIDSLFHSSSSSPFFGSRSIVSFGDVQGGKGCNESFFLPYDDNGDEDTDEYFHQPEKKRRLSVEQVQFLEKSFDEENRLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLLACYDDLKANYDDLLREKDELKAEVAKLTEKVLGREKVEEGNFEKAETKGCFQEPVQKSMIDSASEGEGSKVSIGACKREDIISSAKSEMFDSSESPRYTDGVHSALLETGDSSYVFEPDHSDVSQDEGDNLSMTLLPHYMFPKLEDIGYSDRPHSSCHFGIPEEDQAIWSWSY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02284 322 SMART HOX_1 82 143 IPR001356 GO:0003677
Phco7g02284 322 Pfam Homeobox associated leucine zipper 139 180 IPR003106 GO:0006355|GO:0043565
Phco7g02284 322 CDD homeodomain 84 140 IPR001356 GO:0003677
Phco7g02284 322 SUPERFAMILY Homeodomain-like 70 141 IPR009057 -
Phco7g02284 322 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Phco7g02284 322 FunFam homeobox-leucine zipper protein ATHB-6-like 87 133 - -
Phco7g02284 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 230 IPR045224 GO:0003700
Phco7g02284 322 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Phco7g02284 322 Gene3D - 87 133 - -
Phco7g02284 322 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Phco7g02284 322 Gene3D - 134 182 - -
Phco7g02284 322 Coils Coil 145 179 - -
Phco7g02284 322 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Phco7g02284 322 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02284 Phco-Chr7 40205808 40207489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco7g02284 Homeodomain 2.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01309 8 13642022 13643277 Phco7g02284 7 40205808 40207489 ECH
Phco7g02284 7 40205808 40207489 Phco7g02284 7 40205808 40207489 ECH