Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02279 ATGGAGTTTGGTTCAGAAAGATCTGCTCATGAAGTCAAGGAAGAGAAGAGAACTGAATCCACTCTTGGAGGTCAAGAACATCGTCCTGAACAAGAGATTGTTATGCAGGAGACATCCCTGACAACTCCAGAAAGATCCACCGTTGAGGTTGGGGCACACGTTTCTTGCTTATCCAAAAAGGAAGAGGTTGATGAACTTCAAAATGCAAAAACCGAAATGGGTGAAGTTATAGAGGAAAATCAAAGATTAAAGATACGTTTGAACCGAATACTAAATGATTACCGAACACTGCAAATGCAATTCCACAGTATAGTTGAACAAGAGACAAAAGATTGTTCTGATAAACCGAAGAATGATCAAGAAATGAGGGAGGAATCAGAACTAGTTTCCCTCAGTCTTGGAAGAATTCCAGTTCCAAGAAACAACGAGAAAGGTAAAGTCCCTAAAACTTTGGAAGAGGAAGAAGATGAAGAAGGGTTGTCCCTGGGATTGGAGTGCAAATATGAAACATCAAAATCTGGAAGCACAACTGAACACGTGCCAAATCCAAGCCCTACCAATAGTGTTGAAGAAGTGCCAAAGGAAGAAGCTGCTGGGGAGAGTTGGCCAGCAAGCAAGGGACACAAGACAAACAGAGATGGTGGAGAGGTTGAGGTTTCCGAACAAAATCCTGCAAAGAAGGCAAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTTTGAACGATGGATGTCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGTCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCAGTAAGAAAGCAGGTGCAAAGATGTGCTCAAGACATGACCATATTAATCACCACCTACGAAGGAACCCACAACCACCCTCTTCCTCTTTCAGCAACAGCCATGGCTTCCACCACTTCAGCAGCTGCTTCAATGCTATTGTCTGGATCATCAACATCACACTCTGGATCAAGTCCTTCCCCAAACATCACCACAACTGCTGCAGATCTTCATGGAATTAAATTTTCCCTATCAGATGGTTCACAATCAAAGCAATACTACCTTTCCCATCCTGCACTCTCATCTTCAAATTCACACCCCACCATCACTCTCGACCTCACTTCCAATCCATTGTCCTCTTCAGCCCCTTTTGCCAAATTCACTTCAAATTCAAGCTACAACCCTCAAAGGTACCCTCCTTCCACGAGCCTAAGCTTCAGTTCCTCCGAATCTAATACAAGTTCTTGGAGCAACGGCTTCTTCACCTACAACACTCAACCATATACTAACAACAGGAATGCGAATGTCAATGTCCTCGGTAACATAAACCTCGGAAGACAACAAACGGAACAACAACCGATGGAGAACATCTACAGTTCCTTCATGCAAAGGAACAGCAATCCAATCCCTCCAGCACAACATTCTCTTCCAGACACCATAGCTGCAGCAACAAAAGTAATCACAGCAGACCCTAATTTTCAGTCAGCTTTGGCAGCAGCACTTTCTTCAATCATTGGCTCAGGAAGCAGTCAGGGAAACCAAGGTGCTGCAGAAAATCCGAGTCAGAAAATAAAATGGGGTGAATTGTTTCCACCATCTTTTGCCTTACCTTCATCTTCAAAAGTCAATGGATGTGCTTCAAGCTTCTTGAACAAAGCACCAGCTAATCCACAACCAGGAAGTTTGATGTTTCTTCAGCCACCTTTGCCACTTTCTAGCCCCAAAAGCGCTTCTGGGTCTCCCGGAGATCACAGAGAAAAGAAAAATTAG 1788 0.4385 MEFGSERSAHEVKEEKRTESTLGGQEHRPEQEIVMQETSLTTPERSTVEVGAHVSCLSKKEEVDELQNAKTEMGEVIEENQRLKIRLNRILNDYRTLQMQFHSIVEQETKDCSDKPKNDQEMREESELVSLSLGRIPVPRNNEKGKVPKTLEEEEDEEGLSLGLECKYETSKSGSTTEHVPNPSPTNSVEEVPKEEAAGESWPASKGHKTNRDGGEVEVSEQNPAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMTILITTYEGTHNHPLPLSATAMASTTSAAASMLLSGSSTSHSGSSPSPNITTTAADLHGIKFSLSDGSQSKQYYLSHPALSSSNSHPTITLDLTSNPLSSSAPFAKFTSNSSYNPQRYPPSTSLSFSSSESNTSSWSNGFFTYNTQPYTNNRNANVNVLGNINLGRQQTEQQPMENIYSSFMQRNSNPIPPAQHSLPDTIAAATKVITADPNFQSALAAALSSIIGSGSSQGNQGAAENPSQKIKWGELFPPSFALPSSSKVNGCASSFLNKAPANPQPGSLMFLQPPLPLSSPKSASGSPGDHREKKN 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02279 595 Coils Coil 59 100 - -
Phco7g02279 595 FunFam probable WRKY transcription factor 31 226 303 - -
Phco7g02279 595 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g02279 595 Gene3D WRKY domain 225 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco7g02279 595 MobiDBLite consensus disorder prediction 108 224 - -
Phco7g02279 595 MobiDBLite consensus disorder prediction 108 128 - -
Phco7g02279 595 MobiDBLite consensus disorder prediction 34 48 - -
Phco7g02279 595 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g02279 595 MobiDBLite consensus disorder prediction 1 33 - -
Phco7g02279 595 MobiDBLite consensus disorder prediction 168 189 - -
Phco7g02279 595 MobiDBLite consensus disorder prediction 1 48 - -
Phco7g02279 595 MobiDBLite consensus disorder prediction 395 415 - -
Phco7g02279 595 MobiDBLite consensus disorder prediction 206 224 - -
Phco7g02279 595 MobiDBLite consensus disorder prediction 552 595 - -
Phco7g02279 595 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 48 523 IPR044810 GO:0003700
Phco7g02279 595 Pfam WRKY DNA -binding domain 242 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g02279 595 SUPERFAMILY WRKY DNA-binding domain 234 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02279 Phco-Chr7 40160177 40163607 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco7g02279 WRKY 1.7e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01319 8 13740167 13743852 Phco7g02279 7 40160177 40163607 ECH
Phco3g02803 3 54444396 54447487 Phco7g02279 7 40160177 40163607 ECH
Phco7g02279 7 40160177 40163607 Phco7g02279 7 40160177 40163607 ECH