Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02273 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACCGATGATCAGATCAACGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATACGCGATAGGCGCTCTGACAAGGTTTCAGCTTCGAAGGTGTTGCAAGAGACATGCAACTATATAAGAAGCTTACACAGGGAAGTGGACGACCTAAGCGAGCGTTTGTCTGAGCTATTGGCAACAACTGACAGTGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAG 279 0.4444 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDSAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02273 92 CDD bHLH_AtPRE_like 17 77 - -
Phco7g02273 92 MobiDBLite consensus disorder prediction 1 20 - -
Phco7g02273 92 Coils Coil 57 77 - -
Phco7g02273 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Phco7g02273 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Phco7g02273 92 Gene3D - 18 88 IPR036638 GO:0046983
Phco7g02273 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Phco7g02273 92 FunFam Transcription factor ILI6 7 87 - -
Phco7g02273 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02273 Phco-Chr7 40050493 40051497 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g02273 HLH 6.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02820 3 54586992 54588518 Phco7g02273 7 40050493 40051497 ECH
Phco7g02273 7 40050493 40051497 Phco7g02273 7 40050493 40051497 ECH