Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02261 | ATGGGATCTGATACTTCTGCCATTGTTATTGAGAAGGTCAACAATTCACAAGATGTATCAAGAAAGAGGTCGAGTCCCAATAAACAGAAACAAGAAAAAGTCCCCAAGAGAATTCGAAAGGCTGAGAGAGAAAGAGAGAAGCGTGAACAGTTGAATGAACTCTTTCTTGGTCTTGCTGATACACTTGACCTTAGTGAACAGAGCAGTGGAAAAGCTTCTACACTGAGGGAAGCCATTAGATTGCTAAAAGACTTGATCAGTCAGATTCAGTCCTTGAAAAAGGATAGTGCATCTCTGTTGTCTGAGACTCACTATGTGAGTATGGAGAAAAATGAGATGGCGGAGGAGAATTGTGTTTTGAAAACTCAAATTGAGAAACTTGAAGGTGAGATAAAAGCAAGAGTAGCCCAATGTGGCCCTAACCTGATGAATGTAGCTTCTGAGATGGAATTTGCACAACCAGAAAAGATGGGAAAGTTTCCAGGGGAGAGTCTCCAATTGTCCACCACAGAACCAACAGTGCAGCAAGGACATGCAGTTTTGGTTGTCCCCTTAAGTAATCATCAAGGGAAAGGTGCTTTATCAGCTCATAATGTTGCAGAGCAGACCTCAAAACCCACATCCACTATCAGTAAACCACATGCCAGGTATCCCACCCCAATGGATTCATGGCCTCTACAGTTACTTGCAGAGCAACCAACTTCAAATTAA | 711 | 0.4233 | MGSDTSAIVIEKVNNSQDVSRKRSSPNKQKQEKVPKRIRKAEREREKREQLNELFLGLADTLDLSEQSSGKASTLREAIRLLKDLISQIQSLKKDSASLLSETHYVSMEKNEMAEENCVLKTQIEKLEGEIKARVAQCGPNLMNVASEMEFAQPEKMGKFPGESLQLSTTEPTVQQGHAVLVVPLSNHQGKGALSAHNVAEQTSKPTSTISKPHARYPTPMDSWPLQLLAEQPTSN | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02261 | 236 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 34 | 98 | IPR036638 | GO:0046983 | |
| Phco7g02261 | 236 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Phco7g02261 | 236 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Phco7g02261 | 236 | MobiDBLite | consensus disorder prediction | 191 | 236 | - | - | |
| Phco7g02261 | 236 | MobiDBLite | consensus disorder prediction | 191 | 214 | - | - | |
| Phco7g02261 | 236 | Gene3D | - | 31 | 112 | IPR036638 | GO:0046983 | |
| Phco7g02261 | 236 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 35 | 85 | IPR011598 | GO:0046983 | |
| Phco7g02261 | 236 | PANTHER | TRANSCRIPTION FACTOR BHLH47 | 1 | 235 | - | - | |
| Phco7g02261 | 236 | MobiDBLite | consensus disorder prediction | 23 | 47 | - | - | |
| Phco7g02261 | 236 | Coils | Coil | 75 | 102 | - | - | |
| Phco7g02261 | 236 | Pfam | Helix-loop-helix DNA-binding domain | 36 | 85 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02261 | Phco-Chr7 | 39878291 | 39880005 | Dispersed/Wgd |