Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02258 ATGGAGGGAGGTGATGATTTCCACCACCACCACCACCACCATCACCATCACCACCACCAACACCAACACCGACAAGACTTTCCATTCCAACTCCTCGAGAAGAAAGAAGACCAAGACCCCTCTTCTTGTTCTACTTCCTCCCCATACCCTTCCCTAGCCATCTCAGCCGAACCCTCCACCTCCAACTCAACCCCATCCAACAACAACACCGCCCTCATCCCCACACACTCTGAATCCTCCCCCAAAAAGCCACCTCCCAAAAGAACCTCCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGTCGCCGAATTCGAATGCCTGCTCTCTGCGCTGCCAGAGTGTTCCAGCTCACGCGGGAGCTGGGACACAAGTCTGACGGCGAGACCATAGAGTGGCTCCTCCAGCAGGCGGAGCCAGCTGTCATCGCCGCCACCGGCACCGGTACCATCCCCGCTAACTTCACATCCCTTAACATATCTCACCGGAGCTCGGGCTCCTCCATATCCGTCCCCTCCCAGCTGCGATCCAACTACTTCAATTCAAACTTTTCTCTCCAACCCCGGAGAAGCCTGTTCCTTGAAAACACCAATACTTCCACAACCCTCCTCAATTTTCAATCCAACAACCCCATCTCCACTTCCATGTTCCAACCCAAGCACGAATTGCGCGATTCATCATCCCTAGACTTGTCCTCGGAGAACAACGAAGAGGGTTTGGGAAGGAAAAGACGACCCTTGGAGCAAGACCTATCCTCAACCATGCAACACCAAGTTGGAAGCTATTTGATGCAATCAAGCAGTTCAGGGACAATTCCGGAGAGCCATGCTCAAATTCCGGCGAATATATGGATGGTGGCGAATTCCAATAGCCAAGGAGTGAGTGGTGAAGCTCCTTTGTGGACATTCCCCGGTGTGAGTAACAGTGCTTTGTATAGAGGAAACATGTCAAGTGGGTTGCATTTCATGAACTTTCCTACCCCTATGGCCCTTTTACCTGGTCAACAATTAGGGTCTTCAGGGATTGGTGGGAACATCAACGAAGGGCATTTGAGCATGCTTTCAGGGCTTAATCCTTACCGGACGGTCATCGGCGTTTCGGAATCTCAGGCGAGTGAGTCACACTCACATCACGGTGGAAGCGAGGATCGGCACGATGATAATTAA 1167 0.5253 MEGGDDFHHHHHHHHHHHHQHQHRQDFPFQLLEKKEDQDPSSCSTSSPYPSLAISAEPSTSNSTPSNNNTALIPTHSESSPKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISHRSSGSSISVPSQLRSNYFNSNFSLQPRRSLFLENTNTSTTLLNFQSNNPISTSMFQPKHELRDSSSLDLSSENNEEGLGRKRRPLEQDLSSTMQHQVGSYLMQSSSSGTIPESHAQIPANIWMVANSNSQGVSGEAPLWTFPGVSNSALYRGNMSSGLHFMNFPTPMALLPGQQLGSSGIGGNINEGHLSMLSGLNPYRTVIGVSESQASESHSHHGGSEDRHDDN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02258 388 ProSiteProfiles TCP domain profile. 91 145 IPR017887 -
Phco7g02258 388 MobiDBLite consensus disorder prediction 9 23 - -
Phco7g02258 388 Pfam TCP family transcription factor 89 247 IPR017887 -
Phco7g02258 388 MobiDBLite consensus disorder prediction 236 250 - -
Phco7g02258 388 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 380 IPR005333 GO:0003700
Phco7g02258 388 MobiDBLite consensus disorder prediction 41 77 - -
Phco7g02258 388 MobiDBLite consensus disorder prediction 368 388 - -
Phco7g02258 388 MobiDBLite consensus disorder prediction 81 104 - -
Phco7g02258 388 MobiDBLite consensus disorder prediction 24 40 - -
Phco7g02258 388 MobiDBLite consensus disorder prediction 209 255 - -
Phco7g02258 388 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02258 Phco-Chr7 39825096 39826262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco7g02258 TCP 2.3e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01330 8 13859125 13860315 Phco7g02258 7 39825096 39826262 ECH
Phco7g02258 7 39825096 39826262 Phco7g02258 7 39825096 39826262 ECH