Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02253 ATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCATGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAGCATGGACCCGGGAATTGGAGACTGGTTCCTTCTAATACAGGGTTGATGAGATGCAGCAAAAGCTGCAGACTCAGATGGACCAACTATCTCCGACCAGGAATCAAACGAGGCAATTTCACCGATCATGAAGAGAAAATGATAATCCACCTCCAAGCCCTTTTGGGTAACAGATGGGCTGCAATAGCCTCCTATCTTCCACAGAGGACAGACAATGACATCAAGAACTACTGGAATACCCATTTGAAGAAGAAGCTGAAGAAGATGCAAAGTGAGGGTGATGATGAAGGTAACAATTATGACAAGGGAAACTCTTGTTCACAGCTAAAGGGTCAGTGGGAGAGAAGACTTCAAACAGATATCCACACGGCCAAACAAGCCTTATGTGAAGCTTTGTCCCTTGACAAACCAACCCAAATTTTCCCTGAGACCAAATTACCCTCCACTCCTTCTCAATGTTTCCATGATCACCACCACCCCACATCACCAAACCAAACATCCTTGTACGCCTCAAGCACAGAAAACATAGCCAGGTTGCTGGACAATTGGATGAAGAAATCCCCAAAAAAAACCGAAACAAACTACTCCATCAGCAACATGGTAACCACTGGGTCTAGTTCCAGTGAGGGAACACAGAGCACCGTCACATGCACACAGGACCACCTTGACTCCTTGTGGAGCTTCAAGTCTGAACGTTCAGGGTCTGTGTCAGCAGAAGAAAACACCAACTTGGTCGAGAGCAAGCCGAATCTAGACACGCAAGTGCCTCTAATGTTACTGGAGAATTGGCTTTTCGATGATGCTGCACCTCAGTGCAACGAAGATCTCATGAACATGTCACTAGGGGAAAGTACAGATGGGTTGTTCTAG 960 0.4615 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRLVPSNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQSEGDDEGNNYDKGNSCSQLKGQWERRLQTDIHTAKQALCEALSLDKPTQIFPETKLPSTPSQCFHDHHHPTSPNQTSLYASSTENIARLLDNWMKKSPKKTETNYSISNMVTTGSSSSEGTQSTVTCTQDHLDSLWSFKSERSGSVSAEENTNLVESKPNLDTQVPLMLLENWLFDDAAPQCNEDLMNMSLGESTDGLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02253 319 FunFam Transcription factor MYB30 68 126 - -
Phco7g02253 319 CDD SANT 69 112 IPR001005 -
Phco7g02253 319 MobiDBLite consensus disorder prediction 178 197 - -
Phco7g02253 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Phco7g02253 319 CDD SANT 16 61 IPR001005 -
Phco7g02253 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco7g02253 319 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco7g02253 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco7g02253 319 SMART sant 66 114 IPR001005 -
Phco7g02253 319 SMART sant 13 63 IPR001005 -
Phco7g02253 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco7g02253 319 Gene3D - 13 66 - -
Phco7g02253 319 Gene3D - 69 139 - -
Phco7g02253 319 FunFam MYB-related transcription factor 13 66 - -
Phco7g02253 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco7g02253 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Phco7g02253 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02253 Phco-Chr7 39721028 39722391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g02253 Myb_DNA-binding 7.6e-15 CL0123